DreEX6100471 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3477395-3481322:-
Coord C1 exon
chr25:3481181-3481322
Coord A exon
chr25:3480369-3480582
Coord C2 exon
chr25:3477395-3477578
Length
214 bp
Sequences
Splice sites
3' ss Seq
GTCTAATGTTTGTCCTGCAGACT
3' ss Score
9.41
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
AGCACCGGAGAGCTGGAGATGGCCGATGATTTTGAAGATCTTACTCAGTCCTCGGACACGGCCACAGAAGAGCTGGAGACTCCAGTGTCAGGATACCGCAACGCTTCTCTGCTCTTCAAACAGCTCGACTCCAGCTATCTGG
Seq A exon
ACTCTGTGAGCGTGGTGAAACTCCAGAACATGTTTCATGAGTACGAGCGCACCATCCAGAGGGAGAGAGACAGACACAGTCGACTAGCGGATAAAACCTCTCAGCTGGAGCAGGAGCGCAACGAGCTCAAGATGCTGCTGGACGAGATCAGAGGCGGCAAATCCAGCTTGGAACATCTCAAGCTGGAGCTGGAAACAGACATGAACAATCTCAA
Seq C2 exon
GTTCCTTCTGAGACAGGAACAGGAAAAGCATCAGAGCGCTCTAATGTTGTATAATAAAACACGTGAGCAGCTCCAGAGAAAAGAGGAGCAGCAGAGGGCCGAGGCTGAAGAACGGCACAAAGCTGAGCTGAAAGTGCGCAGCCTGGAGCTGGAGATCAGAGCTCTGAAGAACAGCATCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768-'34-33,'34-32,35-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=0.542 C2=0.597
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGATGGCCGATGATTT
R:
GAGCTCTGATCTCCAGCTCCA
Band lengths:
295-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]