HsaINT1047920 @ hg38
Intron Retention
Gene
ENSG00000170160 | CCDC144A
Description
coiled-coil domain containing 144A [Source:HGNC Symbol;Acc:HGNC:29072]
Coordinates
chr17:16720517-16727740:+
Coord C1 exon
chr17:16720517-16720658
Coord A exon
chr17:16720659-16727526
Coord C2 exon
chr17:16727527-16727740
Length
6868 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
ACCTTTTCTCCCTGACACAGATT
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTCAAAAACCAAATATATCCTGAGGCTGACTTTGCTGACTCAATGGAGCCATCTGAAATAGCCTCAGAGGATTGTGAATTGTCTCACTCTGTTTATGAGAATTTTATGTTGCTGATTGAACAACTTAGAATGGAGTATAAAG
Seq A exon
GTAGGACCACTGCATAAATGCAAGGCCTTTTGATGTATCCTGCAGTAATGTGTGTATACATTGCTGAGAACTGACGTGTGATAGTGAAGCTCATCTCAGAAATACGCTCAGTGTTAAAATAGAGAACTAACTTATACTCTACGCCAAAGAGCTATGATAACTCCACTGTACTTTTCTCAGTGTGAGTGGCATTCCCAGTCTTTTTGTTGACTCTTTCTCTCCTATTCCTTCCCCCAATGTCAGGTTACCATTTTTTTCTCCACCTGGAATGCTGCGAGAATCTTAGGAATCTTAGAACTGTTTTCCCAAATACCCCACCTCCTAAAACCATGGTCTAGTCTGCAATCATAATGATAAATTTTTAAAAATTCGGATCTGATCATGTTACTCCTTTGCTTATAACTCAGCTACTGCTTCTTATTGCTATAAGGTTAGAGATCTGAATCCTCTAGCTTTATCCTGCATCGTTTTTACTCTTCTCTTTCTCTGTGTCCCACTCTGTGTCTTATATGTTTGTTCCAGCACTGATAGCTTCAGTGAGGTATAACTGATATGTGATAGACTGCACGTATATAAAATATACAATCGTGTGCACATTTGAAACCACCATAATCAGGAGAGTTAACATGTTCATCATCCATAAAAGTCTCTTCTTGTCCCTTTGTCTTTCTTTATTAAGAAACTGCTAAATTGTTTTCCAAAGTATTTGTATTGATTTTGCATTCCAACCAGAGGTATACGACATTTCTTGTTGTTCTGTATCATCACAAGCTCTTATTATTGCTGTTTTTAAATTTTGAAATTTTAGCCATTCTGATGGATGTGTATTATGCATATCATTATGGTTTTAATGTGCATTACCCTAAGGACTAATAATGTTGAGCATCTTGTATATGCTTATTTGCCACCTGTGAACTGTCTTTTCCAATCTGGGTAGCTTATGAACATTTAAAATTGAGATTCGATTCAATCAGCTTTTTTACATACACCAAAGATAGTCAAACCTTTTCATTTTCAAACTGTTATCTTACTAAACATAGTAAATATTTTAAACTTGTGACAAAATGGTCTCTGTCACAGCCAATCAACTCTGCCATTGTAGTATGAGACCAGCCATAGACAATACATATGTTAAAAAACACAGCTGCATTCCATTAAAACTTTATTTGCAAAAATAAGAAGCTGCCCCGCAGGTTGGATTTTACCCATCCCTATTATGTGATCATGATTGTGAATAAAGACAGTTTTACTTCTTCTTTTCAACTCAGGTAGCTTTTATTTCCTTTTCTTTCCTAACTGCACTGGCTTCAGTGCAATGCTGACTAAAATAGTGAAAGGAGACATTCCTGTATTGTTCCCGATCTTACAGGGAAAGCATTCAGTTTTTCATCATGACACATGTTAGTTGTAGGTTTATCAGAGATGCTCTTTATCATGCTGATGGTGTTCCCTTGTATTCTTTGGTTACTGAGAGGGATTTTTTTTTTAAATCAGGAATGAATGTTGTATTTTATCAAATGCCTCTATCTACTGAGATGATCATATGGTTCTTTTAGTTTTTTAATGTGGTGAATACTTATATTTTACTGTCAAACAAACCGTGTATTTAGGGATAAACCCCACTTGTTTATGATGTATTATCCTTCTAATGTATCATTGGATTTGATTTGCCAAAGCTTTATTTAGAGCGTTTTAAAAGACTATTTTTTAGAGTAGTTTTAGCTTCACAGCAAAATTGAAAGTAAGGCACAGAGATTATCCCTGTACTCCCTGCCCCCACACATGCATAGCCTCCACAATTATCAATATCCTCACCAGAGTGCTACACTTGACCTCATTGATGTTCCTGAATTGATAATCATAATCATCCAAAGTCCATAGTTTATATTAGGGTTCAGTCTCGGTGTCTTATATTCTGTGAATTTGGACAAAAGTATAAGGACATGTATTTATCATTGTAGTATTATTCAAAGTAATTTCAGAGCTTTAAAACTCCTTTGCGCTTCATCTGTTCATCTTTTCCCACCTTCCCTCCCCAACTCTTGGCAACCACTGACTTTTTTTACTGTGTCTATGGTTTTGCCTTTTCCAAAATGTCATTTAGTTGGTATCAGACAGCGTGTAGCCTTTAGACTGGCATCTTTCACTTGGTAATATGCCTTTGTGGTTCCTTCATGTCTTCTCATGGCATGATAGCTCATTATCGCATGGCTGTACCAGAAGTTGTTCACTCACCTAAAGGAGGATATCTTGGTTTCTTGAGAAACTGGTTACATTTTTACGTCCATGTTCATGAGGGAGTTTTCTCTTTTTGTAATATCATTGTCAGACTTTGGTTCAGGGTAATGCTAGAGTGACAGAATGAGTTGTATTTCTCCTCTATTTTTTTTTTGAGGGCGGGGGAGAGGTCATATAAAATTGTTATATTGCTTCTTAAATATTTGGTAGAATTCACCAGCATAGCTATCTGGGCCTGGAGTTTTCTTTCTAGGAAGGCTTTACTTATGCTTTCTTTTATAGATATAGGACAGTTCATGTTATTCCTTCTTAAATTGGACCTTGGTAATTTTTGTTTTTCAAGGAAAGTGTCCATTTTATCAAAGTTGTCATGTTTAGTCACATAAAGCTTACCTTATTATATTTCTATTCTTTTAGTATCTGTAGAATCTATAAAAATGTCATATTACTATGTTTCTGAAATTAGTAATTTGCATCTTCTTTTTTATGATCAACCTGGCTAGAGTTTTATCACTTTTATTGACCTCCTCATAGTGTGTGGTTTTATTGATTTTTTTCCTATTGTTTTTCCATTTTATTGGTTTCATCTTTGATGTTTTGGTCTGTTCCGCCTGCTATAACAAAATACCATAGACTGGGTAGCTTATAAACAACAGAAATAGATTTCTCACAAAAGTCCAAGATCTAGGTGCTGGCAGATTTGGTGTCTGGTGAGTGACCAATTCCTGGTTCATAGATCTCTTTTTTCCCCCTGTGTCCTCACATGGCAGAACAGGTGAATGAGCCCTCTGGGGTCTATATATATAAGGGCACTAATCCCACTAATGAGGGCTTGGCTCCCATGAGCTAATTACCTCCACAAAGCCTCACCTTCTGATAACATCACCTCTGTGATTAAGTTTCAGCATATGAGTTCTGGGAGGATGCAAATGTCAGACAATACCAGATGCTTATTGTATCATTTCCTCTGCTTGCTTTGAGTTTAATTTGTTCTTCTTCTTTTTCAGTTTCTTCTCTTTTTTTAGTTTCTTAAGATAAAAGTCAAGACCATTGACTTGAGAGTCTTCTAATATAGACATTAAGTGCTAAAAAATTTTAAGTACTGTTGTAGCTGTGTTCCACAAATCCTGATATGTAATATTTTCATTTTCATTCAGTTCAAAATACTCTCTAATTTCTCTTTGCATCGTGTCTTTGACCTAGGGTTATTTAGATGTGTATTACTTTGTTTTAAAATATTTGAATATTTTGATGAGATATTTTGTTACTAATTTGTGACTTGATTGCCATGTGGTCAGGGAACATACTTTGTATGACTTAAATCTTTCTGACTTAATTCTTTCATTAAGATTGATTGCAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGATGGATCACGAGGTCAGGAGATCGAGACCATCCTGACCAATACGTTGAAACTCTGTCTCTACTAAAAATACAAAAAATTAGCAGGGCGTGGTGGCAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCCCGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAGATTGATTGCAGAACCTAGAATGTGGTCTGTTTGGTAAGTGCTCACTGGGTACTTGAGAAGCATGGTGTTGTTCAAGTGTGCTCCATTCTTGCTGATTTGCTGCTCCCTTGTTTTATCACTTATTGAGTAAGTGATATTCAAATCTCAGATGTACTTGTGAATTTGTCTATTTCGTCTATTGATTTTTGCCTCATATATTTTGAAGCTGTTATTAGGTGCACAAACAGTTGAGATTACACGTTCTTGATTAACTGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCAATCTCCTGACCTCGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGCGCCCAGCCGATTAACTGAACTTTTAAAAGTCATTAGGAAATGACTGTTTATAGCTGGTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGTGAAATCTACTTTGGTATTAACATAGCCATTTCTTCTCAGGCTTCTTTTGTCAACTCTTAGCCTGGTATATCTTTTTCCATTCTTTTGAACAATTTATGTTTTTACATTTAAAGTGCTTTTTTTTAATAGGAAGCATGGAGTAGGTTCTTGCCTTTTTATCCAGTCTGACAATCTGCCTTTTAATTGAGACTTTTAGGCCAGTTCCATTTATAATGTGCTTATTAATACAGTGAAATTTGTCTGTCATCAAGCTGTTTGATTTCCACTGGTCCCCCCAGTTCTTTGTTCTCTTCTTTTTCTGCTTTCTTCTCAGTTAGTCCAGTAATTTTTATGATTTATTTTTATCTCCCTTTTATGGCTTATTAGCGATAACTATTTTTTTCTATCTTAGCAGTTGCACTACAATTTATAGTATATGATTTTAACATCACAGTCCATCTTCAAAAAATATTATGGCATATCATATATGGCATAAGAAAATTATGAATGAAAACCCAAACATTGTATGTTCTCACTTGTAAGTGGGAGCTATGCTATGAGGATGCAGGGGCATAAAAATGATACAATGGAGGTTGGGGACTTGTGGGGAAAGAGTGGGAGGGGGGTGAGGGACAAAAGACTACGGATTGGATCCAGTGTATGCTGCTTGGGTGATGGGTGCGCCAAAATCTCAGAAACCACCACTAAAGAACTTATTCATGTAACCAAGGACCACCTGTTACCCCAAAAGCTATTGAAATTTTTTAAAAAAGAAAATTGGAATAGTATACTTTCATTTCCTCTCTCCCAGCCAGATACTTCTGGATTTGTAGGATTATAGTTTTCTTTACATTTAGAAAGTTTTGGCCATTCTTTTTTTATTTTTCTGTCTCTCTTTTTCCCTCTTTGGGGACTTATTCCTGCTTGAAGTTTTCTCATAGTTCACTGATGTCTCAAATTTATGAATCTTCTCTTTGGTGATGTCTAATCTGTGTTCACTTCCATCCATTTTAGCTTTCATTCCTGACATTGTAATTTGAATCTCTACAAGTGTAGTTTGCTTTAAAGAAAAATCTTCCGGCCGGGCGCGGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACACCATCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGCGGTGGCAGGCGCCTGTAGTCCCAGCTATTCGGGAGCCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATCAAGCCACTGCACTCCAGCCTGGGCGACACAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAGAGATAAAAAAAAAAGAAAAATCTTCCATGCCTCTGCCTGTCTGCTTGAGCTTAATTTTAATATACAGTTGAGTTCCATATGAACAGCTTGATCTTTCTGATCTTGCTTTTATGATTTGGTCTAATTTCCTGCTCCTGAGGCAAGATCTTTGTGATGACTCTATTCATTGCCATGCGAAGTCTCAGTTTTCCCAGCATCACTCATGGGAATGGACACTCTTTTTGGCACATCGTGAACACCAGACATGTTTCTTTCCAGTGTTTTTTAGATGTTTTTTTCCCCTTGATCTGGGGCGGTTTTCTGGCACACATGTGCTGTTTGTTACTCTGCTAGATACTCAGGAGGTATTTTTGCAAATCTTCAGTGTTCTTTCCCTGTACTCTGTCTCCTTTCCGGTGTTCTGTTTCGTGATCTCTGTCTGCCTTGGCTTTACCAGACTCTCAGCTTCATCATCTCATCTCAGGGAATCTGGTGGACTCTATGTCAGTTTTTTCTCTCTGTGCGGTAGCCTGGAAACTCCGTGAAGGCAGGGAGCTGGAGTGTTGGATGAATTTCCTTTGTTTCCTGTCTTACGGGGATCATTGTCTTCATTACCTGAAGTCCACTGCCTGGTAAATCATTGTATAATATATTTTGTCTGTTTTCTTTTTGGTTGTTTCAGGCAAGAAGGTAAATCAGTACTTGCTGTCCATTGTGGCCAGAAGCAGATTCCAGCAGAGCTTCAGCACCTGCTGTCGACTGGCAAGAATGCTTTTCTACCCCTTTGCTTAACTGCTTCCTTCTCACCCTTCATTTCTCAGTGTAGCCATCTCTTCCTCAGGGAAATCTTCCCTGGGCCCATTATAGATCAAATTCTTCTGTGTGATCATAGAACTCTGTTTTCTTACACCACATATCTGAATTTATAATTGTCATTTTTGTTGTGTTTGTTCCTCACTTCACTTAAGGCTAAATGAGAGTAGAGGTCTTATCTGTTTTATCTGCAGAGCTTAGTAGAATGTCTCCCACTTTGTAGGCACTCAGTGCATATTTGTTCAATGTATGAAGGAGACAATGTTAAAAATGCACAGTTTTTTAATACCTAAAAGTACTCATATATTTTATTTCTACCTTTTCTCCCTGACACAG
Seq C2 exon
ATTCTGCTAGCCTACCAAGAATCCAAGACACATTTTGTTTGTGTGAACACTTACTGAAACTTAAGAATAATCACTGTGACCAACTTACAGTAAAACTTAAACAAATGGAAAATATGGTCAGTGTACTACAAAATGAGCTATCTGAAACAAAAAAGACAAAATTACAGTTAGAACTTCAAAAAATTGAATGGGAGAAAGAGCTGTACGATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170160:ENST00000399273:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains