MmuINT0015547 @ mm9
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118477674-118479593:-
Coord C1 exon
chr6:118479452-118479593
Coord A exon
chr6:118477888-118479451
Coord C2 exon
chr6:118477674-118477887
Length
1564 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TCTTATTTTTCCTCATTCAGATA
3' ss Score
10.16
Exon sequences
Seq C1 exon
GACAGCGGGCAGACAGCTGCAGTGGACAACCTTGACGACTTTACTGAGTCGTCTGAAACAGCCTCTGAGGACCATGAGCTCCAGGGCCCTGATTCCGAGAGCATTTTGTGTGCGATCGAGCATCTCAGACTGGAGTGTAAAG
Seq A exon
GTATGGCCATGGTGTAAATGGAAGGCCTTGTTATGTATGGTGATGTATGCCACTTAGCTCAGCATTGCCCCTCGACCCTGGATGTGTGGCAGTACTGTTCCTGTACTGAGGAGTGTTTCGAGAGAGAAGTACTCGTTAGATAACATAGTATGTGAGCTGCTCAATATGTACTCTCAGCCAAAGCTGCAGTCCCTCTCACGAGACTGACACATCCAGTGTTTTTGTTCAGCTTGCTTTTCTGTGTTTCAGTTGTCTTAGATGTTGCAGTAGAATGTTTTGTTTTATACAGTTTCAGCAAGACATATTGATATATAGAGGGTAATTTGGTTCATTTCAACATATGTATTAAACACATATTTAATTACCAGAGTCAGCCTAGTTAACAGATCTATTGAAGAAGCCCCCGTTTCTCCCACACTCTCTATTTAAAAGCTGAAAGATTGTTCTCTAGCATGTCCCCCGTTCTGTCTTCCAGACCATGAGATAGGAGAGATCCAGTGTGTGTGTGGGTGGGTGGGTGTGAGTGAGTGAGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCAGAAACACTGATTATCAGTATTTTAAATCTTAGCTATTCTGACAGCTGCACAGTATGCATATCATGCTGGTCTTCATGTCCATTACACTACTAGTTAACGTCAAACATTTTCCTTAACGTCAAACATTTTCCGTGTATTTCTTTTCCATTACTGTGTCTTTGATGAACTTCTTTCTTGATCTGTGTCCATTATCTTGTAAATTGTATTTGTCCAGCCTGACTAAGCAGAATAGACATTATTCTTATAGGAGCGGTGGATGAGATTTCATCTAATCTTTTCAGATAGTTTATTCTTGTTTAATGTAGTTTCTTGCTGTTCGTGTCTTGTTCAGTTCCTTGCTGAGTACTCCAGGCCCTCTATAGACCTGATAAAGGGTCTTTATCTGTGTGGCTGGCTCCTCTCTGGTCTGTCCTGTGATCTCAAGCTGTCTTTGATTATCAGACTCTGAACTCATTCACCTCAACTCAGCAAGTCTAGGGAGCTCTACTTCAGTTCTTTGTCCGTGAGTGGTAAGAGAGTCAGGCTTGGGATGTTCATAAATTTCATTTGTCTATTAAGGATCATTGTCGTGAGAATTATTTAAGATATTTTATCAGTCTCCGTTTGTGTTGTTTCAAGTGGGAACATGGCTCCACAATTGTTACCTCATCCTGGCTAAAAGCAGATTGAAATGGAGGCTCATTAAATGCTTCTTGTTTTTCTGTTTTAAATCTAGCATGGAATGTTTGACTGAGTTTAGTTTAACATGAAGATCTCCAGTTCTATCCAGTTTTATAAGAACAACCCCATTGTGTATAAATTACACTTTTTTTTTAAAGCTGAACCAGGGCAAGGGTCGCCTGTGTTATTTGCAGAGCCTAGTGTAATGTGTTCCTCATTGTTGGCGCTTAGTGTGAGTGAGTGAACGCAAGCATGCAGGCTTTTTCTAATATGCACACTCATTTTATCTGTCTCTTATTTTTCCTCATTCAG
Seq C2 exon
ATACTGCTAGTCTATTGAAAATCCGGGATGCCGTTTATTCATATAAACGATTAATAGAACTTAAAAGAAGCCACTGTGAACTACTTACAGGAAAACTGAAAAGAATGGAAAACAAATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=0.264
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(2.4=16.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCTGCAGTGGACAAC
R:
AGCCTGCAGAGCTCCTGTTC
Band lengths:
344-1908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: