RnoINT0017752 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150575985-150578292:-
Coord C1 exon
chr4:150578151-150578292
Coord A exon
chr4:150576199-150578150
Coord C2 exon
chr4:150575985-150576198
Length
1952 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
GTCTCTGTCTCCTCATCCAGATA
3' ss Score
10.22
Exon sequences
Seq C1 exon
GACAGCAAGCAGACAGCTGCTGTGGACAACCTTGACAACTTAACTGAGTCATCTGAAATGTCCTCTGAGGACCATGAGCTCCAGGGCCCTGACTACGAGCGCATTTTGTGTGAAATCGAACATCTCAGACTGGAGTGTAAAG
Seq A exon
GTGTGACCGTCGTGTGAACGGAAGGCCTTTTGAAGTGTGGTGATATACGCCACTTAGCTGAGCACTGTCCCTCGGACCCTGTTCCTGTCACAGATACTCGTTATATCCACATAGCTTGTGAGCTGCTCAGTGTACACCGTCAGCCAAGGCACTGCAGTCCCTCTCACAGGACCGACACGTCCAATCTTTTTGTTCATCTTGCTTTTCTCCTGTGCCTTACTGTCACCGGGTGACGTTATCTGGTGTGCTGGCTAGTCACGTGTCAACTTGACACAAGCTATAGTCATCAGAGAGGAGGGAGCCTTAACTCAGCATATGCCACCATAAGCTCTGGTTGTAGGCAGACCTGCAGGACATTTACTTAATTAGCAAGTAATGAGAGGGTCCATCCCATTGAGTGGTGTTACCCTGGGCTGTGGTCCTGTGTTGAGCAAGTCATGCTGAGCAAGCCACTCCCTCCGTGGATTCTGCATCAGCTCCTTCTTCCAGGTTTCTCTCCTTTTTCCTTCCTGCCCTGATTTCCTTCAGTGATGAACTGTCATTGGAACACTAAACCAAATTCTTCCCCAAGTTGCTTTGGTCTTCTGTCTCATCAGAACAGTAATCACCCTAAGATTCCTGGTGTCTGCCTGGAATGCTGTAAAACTAGAAAGCTGTTTCTCTTGTTTACCCACCTCCTACAAACATAGTCTCTCTTTTAACTGTCATTATGTAATTGTAAAGACTCAGATCTAATCACATGAACCCTTTGCTACCAGGTTAAATTGCCCAGTCCTTTAGCTTTCTCCTGCCTTTTCTGTGTCTTAGAAGTTGCAGTGGAATGTTTTGTTTTATACGGTTTCAGCAAGGCATATTGATACAGAAAGGGTAACTTGGTTAGTTTCAACATATGTATTAAACACATATTTAATTACCATAATCAGCACAGTTAACAGATCTATGAAGAATCCTCCATTTCTCCCACGCGCCTTCCTTGTTGAGCTGACAGGCTGTTCTCCAGCATGTCCCCATTCTGTTTTCCCATCCACGAGATAGGAGAGATCCAGTCTGTGTCCTCAGAAACACTGAATATCGGTACTTTAAATCTGAGCTGTTCTGCTGGGTGCGTAGTATGCATATCCTTCTGGCGTTAATGCACAGTGCACCTCTAATTAATGTCCAGCATTTCCGTGTCTTTCTTTTGCTTTACTGTGTCTCACACGAACTCCTTTCTGATCTGAGTCCATTGTCCTGTAAACTGTATTGTCCAGCCTGACTGAGCAGAGCGGATCTTCTTAGAGGAGCAGCGGACGAGACTTCGTCTAATCTTTTCAGCTGTCTTATCCTGGTTGATGTAGTTTCTTGCTCTGTGTGGATTGTGCAGCACTTGGCTGAGTGTTCTAGACCCTCTGCAGTCCTGCAGGGTCTTAGTCTGTGCTGCTATCTCCTCTCTGGTCTGTCCTGGGATCGCAGACTTAATCACCTCAACAAAGCACGTCTAGGGAGCTCGACTTTAGTTCTTTATCCGTGAGGGGTAAGAGAGTCCAACCTGGGATGTTCATGAATTTCATTTGTCTGTTAACAATGGTTGTCATGACAATTGTCATTTAAGCTGTTTTATCTGCTTCATGTGGGTTGCTTCAAGTGGGAACGTGGCTCCATAGTTGTTACCTCATCCTGACTAAAAGCAGACTGAAATAGAGGCTCATTAAATGCATTTTGTTTTTCTGTTCTAAATCTAACATGGAATGTTTGAGTTTAGCTTAACATGAAGATCTCCAGTTCTATCCAGTTTATAAGAGCAACCCCATGGCGTCTCGGCTCCAGTTTCTCTTAAGCTGAGCCAGGGCAGTGGTCACCTGTGTTATCTGGTGTAACAGGTTCCACCTTGTAGGCGCTCAGTGTGAGTGAACTCACAACATGCAGGCTTCTTCTAATGCGCAGTCATTTTATGTCTCTGTCTCCTCATCCAG
Seq C2 exon
ATACTGTTAGTCTGTTGAAAATCCGCGATGCTGTTTATTCTTATAAGAGATTAATAGAACTTAAAAGGAGCCACTGCGAGCTACTCACAGGGAAACTGAAAAGAGTGGAAAGCAAATGTAAGGGACTACAGAAGGAGGTGTCAGAGACGGAAGAAGTGAGGTCACGGCTGGAGCATGAGAAGCTCGCGTGGGAACAGGAGCTCTGCAGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.014
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGCTGCTGTGGACAAC
R:
AGGCTGCAGAGCTCCTGTTC
Band lengths:
344-2296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]