BtaINT0018323 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17931168-17933208:-
Coord C1 exon
chr13:17933073-17933208
Coord A exon
chr13:17931382-17933072
Coord C2 exon
chr13:17931168-17931381
Length
1691 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTGTTTTCTTCATCATGCAGATT
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTCAAAGAACAAATTAATTCTGTGGATGACCTTGATGACTTAACTCAGTCATCTGAAACAGCTTCCGAGGATGGCGAGTTGCTTTACTATAAGAATTCCATGTTGCTAATTGAACAACTTGACACGGGGTGTAAAG
Seq A exon
GTAGGACTGCAGTGTAAATATAAATACAATGCCTGTTTGTGTAAGGTGTAGTAGTAATCTGTGTACACCTTGTCTAGTACTGCTCTGGAGCCAGGGATGTGTTACAGTGCTGTGCATCTCAGAAGTAGGTTCTGTATTGAAAGAACATGAACGTGAGTGGATACTCTGCGCCACAGGCCTATGATCATTCTCACTCACTGTACCTTCTGTTGACTCTTCTTTCCTGTGCCTTCACCCAAGGTCAGGTTAGCATCACTTTCCTCCTGGAATAACTGAAATAATCTCAGAACTTCTTTCCCTGCCATTCTACCTCCCGGAACCTCAGTCCACACAGCAACTACAATTATTATCTATTTTTAAAAATTCAGATCTCATCCTGTTACCCCTTTGCTTGAAGCCCAACTGTTGCTTCTCTTTGCTTCATGGTTAAAGGTCACAATTGTCTAGTTATATTTTTTACCCTTCTTTCCACATGAATTTTAGCATCAGCGTGTCAGTTTCCTAAAATGCCTGCTGGTCTTACGTTTTCATTTTCCTTCAGTTCAAAATACTTTGTTATTCTTCTTTTCATTACCTCTTTGATCCAAGGTTATTTAGATCCGTGTCATTTAGTTTCCAAATATTGAGAGTTTTCCAGAGATCCTTCTGTGCTCTTGCTTCTCATGATTTGTTAGGTGCATCCAGAGGGGCCCTGGGGCTAGGGCTGATTATTTCCTGCCTTGGAGGCAAGACCTTACGGACTATCCTGTTCATTTTACTGTAAGGAGAAATTTTTCCAGCCTGGCTCATGAGAATAGATAGAATTCCTGGGTCTGAGTGAGCACCAGTTACAGGTTCCAATAGTCTTTTCAGATGGTTTCTCCCTGGTCTCAGGTGGTTTCTCCCAGATAGGTGCTGTTCATTCCTCTGCTGAATACCCGAGGGGCTCCTCCTCAGATCTCCAGGGTCCTTTTTCTCTCTGTCCCACTCTCTCCTCTCCCGGTTCTGATCTGTGATCTCTGCCCACTTTGGTTTCACCAGACTGTCAGCTTCATCACCTCCTGTCAGAGAGTCTGGATGACTCAGCTTCCATTCCTTCTCCCCGTGTAGGGGCCTGGAAATTCTCCCCAGGCAGTGAGCTGGGGCGTTCCTTAGGCTAACCTGGTGTGTTTCCGGGATCATTGTCCTTCACTCCCTGAAGTCCTTTGTCATAAAATCATTGTTTAATGTATTTTGTCAGCATTGTTTTTGCTCGCTTCACTCAGGAAGGTAAATCAGTAGTTGTTCACTCTGTCTTGGTTAAAAACATATGGCAGCTGGAGACTGTCCACAAGGTTGTTCCTCCTACTCTACTTACTACTTCCTGCTCATCCTTCATTTCTCAGTGTGACATCTCTTCCCCAGGGAAATCTTTCCTGGACCCAGTCTGTGTCAAGTTCTGTTATGTGATCATAGAACTCTCTTTTCTTAGAGTATCCTTCTGAGTTCATAATTATTTTATTTATCTTTCTCTTTTATTAGACTTCAAGCTAAACAAGAGCCAGGGGAGTCTGTTTCATCTGCAGAGCTTAGAATAATGTCTTCCACATTATAGACACTTAATATTTGTTCAGTGTGTGGATGTGTGTACGTGAAAGATACAGTCCTTTATACTCAAAAATTACTCACATAAAATTTTTTTTGTTTTTATCTTTGTTTTCTTCATCATGCAG
Seq C2 exon
ATTCTGTTAGCTTGTTGAAAATCCGGGATACGATTCTTTCGTATGAAAGATTAGTAGAACTTAAAAAAAGCCACTGTGAACTGCTTAAAGGAAAGATTAAAAAAATGGAAAGTAAGGTTCGTGGGCTACAGAAAGAGCTGTCAGAAACAAAAGAAGTGAAATCACAGTTAGAGCATCAGAAAGTGGAGTGGGAACGTGAGCTCGGCAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAATTAATTCTGTGGATGACC
R:
GAGCTCACGTTCCCACTCCA
Band lengths:
334-2025
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development