GgaINT1001371 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24089735-24091586:+
Coord C1 exon
chr1:24089735-24089873
Coord A exon
chr1:24089874-24091372
Coord C2 exon
chr1:24091373-24091586
Length
1499 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TACTTTTTGTCTCCATATAGATT
3' ss Score
9.18
Exon sequences
Seq C1 exon
GGCAGCATGCAAATGGATGTTACTGATGACCTTGATTTAACACAGTCATCTGATACAACTACAGAGGATGCTGAGTTGCCAACTTCAACTTACAAAGAAGCTATGTTGCTGTTTGAACAGCTTAGTGTGGATCATACAG
Seq A exon
GTAAGTTTCTAAATCACTTTGTCTGCTGTTACAAGTTCCTCTTTTAAAACTCGTTTCCTTGTGAACCTTCACAGTTCTTTAGTTTTCTGTCTTGGCCTATTGTTTATGATCAAAATTGACTCTTGCCCATATCCTGCTCCCCAGAAAGTAGAGACTCCCTCTGCACTGAATGCAGAATTCAGCTCACCTACCCTCAGATGTCCATATGTGTTGTCAGCAAGCACGCCTTACCTACTGCTGGCTGTCTCTAGTCAGAATTGGAAGAGCAGGTTTTGTAAGGTACATGCCAGCTCATTCAAATGTAGTGATGAGAAGTTAGCAAGACCAGTCTTTTTTTTTTCCTGTTTATGCCTCTTACTATGTAATGACAAATTGCTTCTCAAAATAATGGCTTTGCTGAAAAAAAAAATCTATAATGAAATGTTGTAATATGCTTGCATATATACACGTAGTTTGATATAAATGTAAGCAGCGCTAATTTTCTTAATCTTTGCTAAAACTTCATTAGGCAAATACGGATTAACTGTAGCTAAAGACCTTATTCATACCCACCTGCACTGTTACTTCCACTCTTCAACAGGACAGGAGGTGAAAATAGGAGATGAAAAAGCTCAGGAAATGAGATAAAGACAGGGCCATCACTAATTTTTGTCACAGGCAAAACATGCTCCACTTGGTGAAAATTAATTTCATTGTTTGCCAATTAAACTGGGGAGTGAGAAAGATAAAAATAAGTAAATAAAACACCTTCCACCCACCACTTTCTCATGCTTAATTTTGCTTCTTTGCTCCCACTTCCTGAGCAGTGCAAGGAGGATGGTGGGTCTCCAGTCGATACATGGTAGTTCCTCTCTGCCTCTTCTACATCTTCACACATTTTCTGTGCTCTAGCATAGGTCCTTCTGCAGGCTGCAGTACAGACTGCAGGATAAACCAGTTCAGCCTGGGCTCTGCATGGGCTACACTTCTCGTCAGGAAGATCTGCTCCAGTGTGGACTCTTCATCAAATAAAGATCCTTTAGGAATTAGCCATTTGTTCTCCAGTGGAGTCTTCCATGGGCTGCAATGTGGATATCTGCTCCAGTGTGGCCCTTTCCAAGGGCTGCAGGGAAACACCTGCTCCATTATGGTGCTCTCCACAGGTTGTTTGGGAATCTGCTCCCTCACCTGGAGTGCTTCCTCCTTCATCTTACATTTTTTTCCACTGTTACTTACACTTTTTTTTCCCCTCCTTCTCTGCCTACTTGGTGTTTTTGCCCTTTCCAAAATATGCTTTCTTGGAGGTGCTGTAAGATTGGCTGATAGGCTGAGTTGTATCCTGTAGCGGGTCTGTTGGATTTATCTGCATTTGTCACAGTCTTTTGGGTCTTTCTTATAGAGACTTCGCCACGACTAAAACCTTGCTACCTATACCCAATACAGCAAAGAATTAAATAGATTGTACACTGGAAAGTATTTGTGCATATGTGTGATTTTGTGTACTTTTTGTCTCCATATAG
Seq C2 exon
ATTCTGCTATTTTGCTGAAAATTCAAAACATACTTCTTGAATATGAACAGATAATAGATTGTGAAAAAAAACGCTACACAGCTCTCTGGAGAGAAGTCAAGAAGTTGGAAAGTGAAAAAGAGGAGTCACAGTTAATAGCAGAAGAGACTCAAGATTTGAAATCCATATTGGCTCACCAAGAAATGGAATTGAAAAGTGATATCCAAAGCCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCATGCAAATGGATGTTACT
R:
GGCTTTGGATATCACTTTTCAATTCC
Band lengths:
348-1847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]