HsaEX1007397 @ hg38
Exon Skipping
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136268049-136275007:-
Coord C1 exon
chr9:136274883-136275007
Coord A exon
chr9:136274658-136274749
Coord C2 exon
chr9:136268049-136268125
Length
92 bp
Sequences
Splice sites
3' ss Seq
GGGCATGTCCTCACCTGTAGGTC
3' ss Score
8.46
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CAGCTGATGGAGAGACACTCGACCCAGGCCAGGCCAGAGGAGGCGTTGAAGCTGGAGCAGCCTCCGATGTGCAAGGACCGAGAGCCGACCACAGCCTCTCAGAGCACAGGGATGGCCACACCCAG
Seq A exon
GTCACACCCGCCTCTGGACACAGATGCTGCCACGTCCTCCCAGGGTCCCGAGGACAGGCCAGAGAATGTGGTGGCCAAGCCAGCCTCTGCAG
Seq C2 exon
AGGTGGAGGGCCCTGACGGAGCCCTCTCCCAGCTTCCCCTGGCCAAGTTCTTCCCTCCGGACAACCCCACCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.981
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAGACACTCGACCCAG
R:
GAAGAACTTGGCCAGGGGAAG
Band lengths:
172-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains