MmuEX7000819 @ mm10
Exon Skipping
Gene
ENSMUSG00000048038 | Ccdc187
Description
coiled-coil domain containing 187 [Source:MGI Symbol;Acc:MGI:3045295]
Coordinates
chr2:26258159-26265386:-
Coord C1 exon
chr2:26265262-26265386
Coord A exon
chr2:26265061-26265134
Coord C2 exon
chr2:26258159-26258235
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATGGTTTTCTGACCCTTCAGATC
3' ss Score
8.71
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
AGGCAGATGGAGAAACCCTCAGCCCAGCAAGGGCCAGAAGAGACTTCAAAATGGAAACAGCAGCAGATGTGTGGTGGCCCAGAGCCAAACACATTCTTTCTCCACACAGTGGAAACCAGATCCAA
Seq A exon
ATCACCACTCTCCCTATATAGAGACAACCCCAAGTCCCCGAAACATCTTGAGGAAACAACGGCAGTTTCTGCAC
Seq C2 exon
AGCCAGTGCAGCAGGACACAAGCCCCTCCCTGTTGGTTCTAACCGAGTTCCACCCTTCAGACAGACCTACCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048038-'22-22,'22-20,23-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=0.865 C2=0.654
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGAGAAACCCTCAGCCC
R:
TCTGAAGGGTGGAACTCGGTT
Band lengths:
182-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types