HsaEX1007744 @ hg38
Exon Skipping
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:61018289-61020377:+
Coord C1 exon
chr11:61018289-61018393
Coord A exon
chr11:61018800-61018861
Coord C2 exon
chr11:61019330-61020377
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGTGTATCATGCCCCTGCAGGGT
3' ss Score
9.15
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
Exon sequences
Seq C1 exon
CAGGGCCCCCGGCTGATGACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCAGTTTGGCTGTCCAG
Seq A exon
GGTCAGAGCAAGACCCTCTTTCTACAAGAAAACAAACACAAGCACAACAAGAATATGAAGAG
Seq C2 exon
CCGAGGCTCCTGGGGTGGCTCTGACCCTCTGGCCTCCTGCTCTACCTACTCCCTTTCCCCTTTCCCACCCTCCCAGCTCACCTCCCCATGGAGCTGAGAGGCCTCCCTTGGAGAGATGGAAGGAAACGTTATACCTTGTACCCCTCGGTCTCCATCCATCAAGCCAAACCTGCTGCCACAGCCCTCCCCCGGCCCCAGATAGCAGCCCCAGGGAGGATGCTGCCTCCAAGAGGTGTGAGCCCTCTGTCTCGGGGATGAACAAGCAGAGTCTGGGCTACCTCTTGACAGCTGGTGGAGGGGAGTTGGGGAGCTGGACTGGATGACTCTGGAGGCCCCTTCCAAACCTCAAGTGTCCGGCGCTTTGATTGCCTGAGTTTCTGACACTTCAGGGCCCAGAGGTCCTGCGAGGGGCAGAACTGGACCCCCATGCCAGTGCTGCTGCAGGAGGGCCCATATACTAGGGTCTGCTGAGCTGTTGTCACTGATCGGTGGGCGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.948
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000313421fB11745
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGCTCCAGCACCTCAT
R:
GAGTAGGTAGAGCAGGAGGCC
Band lengths:
141-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains