HsaEX0013897 @ hg38
Exon Skipping
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr11:61017759-61020377:+
Coord C1 exon
chr11:61017759-61018013
Coord A exon
chr11:61018289-61018393
Coord C2 exon
chr11:61019330-61020377
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGTTCTGGGGGTTTCCAGCAG
3' ss Score
4.72
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GACTTGAAGAGTTGCATGCCTCCCACATCCCAACTGCCAACCCTGGACACTGCATTACAGACCCGCCATCCCTGGGCCCTCAGTATCACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCAGGGGAGGATTACTGCAATAGTCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCTGGAGCAGCCCCCAAACTTGGAGCTGGCCGGCACCCAGCCAGCCTTTTCAG
Seq A exon
CAGGGCCCCCGGCTGATGACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCAGTTTGGCTGTCCAG
Seq C2 exon
CCGAGGCTCCTGGGGTGGCTCTGACCCTCTGGCCTCCTGCTCTACCTACTCCCTTTCCCCTTTCCCACCCTCCCAGCTCACCTCCCCATGGAGCTGAGAGGCCTCCCTTGGAGAGATGGAAGGAAACGTTATACCTTGTACCCCTCGGTCTCCATCCATCAAGCCAAACCTGCTGCCACAGCCCTCCCCCGGCCCCAGATAGCAGCCCCAGGGAGGATGCTGCCTCCAAGAGGTGTGAGCCCTCTGTCTCGGGGATGAACAAGCAGAGTCTGGGCTACCTCTTGACAGCTGGTGGAGGGGAGTTGGGGAGCTGGACTGGATGACTCTGGAGGCCCCTTCCAAACCTCAAGTGTCCGGCGCTTTGATTGCCTGAGTTTCTGACACTTCAGGGCCCAGAGGTCCTGCGAGGGGCAGAACTGGACCCCCATGCCAGTGCTGCTGCAGGAGGGCCCATATACTAGGGTCTGCTGAGCTGTTGTCACTGATCGGTGGGCGCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725_MULTIEX1-2/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=1.000 C2=0.948
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTATCACCCGAGGAGCA
R:
GTGGGAAAGGGGAAAGGGAGT
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development