BtaEX6102526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018367 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:HGNC:1691]
Coordinates
chr29:37935899-37937146:+
Coord C1 exon
chr29:37935899-37936165
Coord A exon
chr29:37936449-37936553
Coord C2 exon
chr29:37937082-37937146
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTGGCTCTGGGGTTTTCCAGCAG
3' ss Score
5.88
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GCCCAGGACTGGAAGAGGTGCATGCCTCCGAGGTCCCACCTGCCAACCTTGAACACTGCATTGCAAACCCTCCCTCCCTGGACCCTCCTCCTCCACATCCTCCAAGGAGCAAAAGCAGCTCCAGCACATCTTCGGGGGAGATGTACTGTAATAGCCCCAGCAGCAAGCGACCTCTGTGGAGCTCTCAAGTGTTTTCATCAGAGAGGAACCCCCTCCTGGAGCAGCCCCCCAACTTGGAGCTGGCTGGCTCCCAGGCAACTATTCCAG
Seq A exon
CAGGGCCCTCAGCTGATGACAGCTCCAGCACCTCCTCTGGCGAGTGGTACCAGAACTACCAGCGGCCGCCCCAGCCCCTTTCTGCTGAGCAGTTTGGATGTCCAG
Seq C2 exon
GGTCCCATGCTCCCCAGCCTGACTCCTCCTCTGATGAAGAATATGATGATATCGGAGCAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018367-'10-15,'10-13,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGCATTGCAAACCCTCC
R:
ATCAGAGGAGGAGTCAGGCTG
Band lengths:
250-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]