MmuEX6031558 @ mm10
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10789341-10791170:-
Coord C1 exon
chr19:10790916-10791170
Coord A exon
chr19:10790569-10790670
Coord C2 exon
chr19:10789341-10790243
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTAGCTCGGGTCTTCCGCAGGGC
3' ss Score
7.22
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG
Seq A exon
GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG
Seq C2 exon
GACCCCCTGGCCCCCAAACAGACTCCATTGATGATGATGAGGAGGATTACGATGACATCGGTGCAGCCTAGCCTGGGTCCCCGAGGCTCCTGGGTGGCCCCTCCCTCTGCTCTCTTGTTCTAGCCCCTAGCAGAGGTGGAAGGGTGGGCATTCTCCCAGCCCCTCATCCTCCACCCATTGATTAACCTGCAGGAGCCCGGAACAGAAGACAAAGCCAGTGGTGTGAGAGCTGAGTCCTGGGTTGAACAAACAGGGTCTGGCCACTTCTTGGGAGTGGTGAAGGGTCATGCTGGGTGACCCTGAGGCCTTATCTCACTCCGTGTCTGGCACTTTGATCCTAAGCCTCAGGAAGCTGCTGAAGGGGCTGAGTAGCCCACCCACTGCTGAAATACAGGCCCTGGGCCAGGGGCTGCCATTATCACCCAGGAAGTCAGCGATGTCTCAATACAACCTGGGGCCTCAATCAATCAGAGTAGCAGCCGCTTTAGCACGGGCATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670-'18-23,'18-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGGCTACTGCAATGA
R:
AACAAGAGAGCAGAGGGAGGG
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types