HsaEX0013897 @ hg19
Exon Skipping
Gene
ENSG00000013725 | CD6
Description
CD6 molecule [Source:HGNC Symbol;Acc:1691]
Coordinates
chr11:60785231-60787846:+
Coord C1 exon
chr11:60785231-60785485
Coord A exon
chr11:60785764-60785865
Coord C2 exon
chr11:60786726-60787846
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTTCTGGGGGTTTCCAGCAGGGC
3' ss Score
3.67
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GACTTGAAGAGTTGCATGCCTCCCACATCCCAACTGCCAACCCTGGACACTGCATTACAGACCCGCCATCCCTGGGCCCTCAGTATCACCCGAGGAGCAACAGTGAGTCGAGCACCTCTTCAGGGGAGGATTACTGCAATAGTCCCAAAAGCAAGCTGCCTCCATGGAACCCCCAGGTGTTTTCTTCAGAGAGGAGTTCCTTCCTGGAGCAGCCCCCAAACTTGGAGCTGGCCGGCACCCAGCCAGCCTTTTCAG
Seq A exon
GGCCCCCGGCTGATGACAGCTCCAGCACCTCATCCGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCCCCCTTCGGAGGAGCAGTTTGGCTGTCCAG
Seq C2 exon
GGTCCCCCAGCCCTCAGCCTGACTCCACCGACAACGATGACTACGATGACATCAGCGCAGCCTAGGCCGGGGCCAGCCGAGGCTCCTGGGGTGGCTCTGACCCTCTGGCCTCCTGCTCTACCTACTCCCTTTCCCCTTTCCCACCCTCCCAGCTCACCTCCCCATGGAGCTGAGAGGCCTCCCTTGGAGAGATGGAAGGAAACGTTATACCTTGTACCCCTCGGTCTCCATCCATCAAGCCAAACCTGCTGCCACAGCCCTCCCCCGGCCCCAGATAGCAGCCCCAGGGAGGATGCTGCCTCCAAGAGGTGTGAGCCCTCTGTCTCGGGGATGAACAAGCAGAGTCTGGGCTACCTCTTGACAGCTGGTGGAGGGGAGTTGGGGAGCTGGACTGGATGACTCTGGAGGCCCCTTCCAAACCTCAAGTGTCCGGCGCTTTGATTGCCTGAGTTTCTGACACTTCAGGGCCCAGAGGTCCTGCGAGGGGCAGAACTGGACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000013725_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.998 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF151021=TMEM154=PD(2.6=3.5)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTATCACCCGAGGAGCA
R:
CTAGGCTGCGCTGATGTCATC
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)