MmuEX6031558 @ mm9
Exon Skipping
Gene
ENSMUSG00000024670 | Cd6
Description
CD6 antigen [Source:MGI Symbol;Acc:MGI:103566]
Coordinates
chr19:10863829-10865660:-
Coord C1 exon
chr19:10865406-10865660
Coord A exon
chr19:10865059-10865160
Coord C2 exon
chr19:10863829-10864733
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTAGCTCGGGTCTTCCGCAGGGC
3' ss Score
7.22
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GACTTGAAGAGCTGCATGTTTCCCACATCCCAGCGGCTGACCCCAGACCCTGTGTGGCAGATGTCCCCTCTCGGGGCTCTCAGTACCACGTGAGGAACAACAGTGATTCCAGCACCTCCTCTGAGGAGGGCTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAATTCCCAGGCGTTTTATTCTGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCCGGCAGTGTTTTCAG
Seq A exon
GGCCCTCAGCCGATGACAGCTCCAGCACCTCATCCGGAGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGCAGAACAGTTTGAATGTCCAG
Seq C2 exon
GACCCCCTGGCCCCCAAACAGACTCCATTGATGATGATGAGGAGGATTACGATGACATCGGTGCAGCCTAGCCTGGGTCCCCGAGGCTCCTGGGTGGCCCCTCCCTCTGCTCTCTTGTTCTAGCCCCTAGCAGAGGTGGAAGGGTGGGCATTCTCCCAGCCCCTCATCCTCCACCCATTGATTAACCTGCAGGAGCCCGGAACAGAAGACAAAGCCAGTGGTGTGAGAGCTGAGTCCTGGGTTGAACAAACAGGGTCTGGCCACTTCTTGGGAGTGGTGAAGGGTCATGCTGGGTGACCCTGAGGCCTTATCTCACTCCGTGTCTGGCACTTTGATCCTAAGCCTCAGGAAGCTGCTGAAGGGGCTGAGTAGCCCACCCACTGCTGAAATACAGGCCCTGGGCCAGGGGCTGCCATTATCACCCAGGAAGTCAGCGATGTCTCAATACAACCTGGGGCCTCAATCAATCAGAGTAGCAGCCGCTTTAGCACGGGCATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024670-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAGGGCTACTGCAATGA
R:
AACAAGAGAGCAGAGGGAGGG
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: