RnoEX0018724 @ rn6
Exon Skipping
Gene
ENSRNOG00000020884 | Cd6
Description
Cd6 molecule [Source:RGD Symbol;Acc:2312]
Coordinates
chr1:226848403-226850297:-
Coord C1 exon
chr1:226850046-226850297
Coord A exon
chr1:226849703-226849807
Coord C2 exon
chr1:226848403-226849319
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAACTAGCTCGTGTCTCCAGCAG
3' ss Score
3.7
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GACTTGAAGAGTTGCACGTTTCTAACATCCCAGCTGCTGACCCCAGACCCTGTGTGGTGGATGCCCCCTCTCTGGGCTCTCAGTACCACACGAGGAACAACAGTGACTCCAGCACATCCTCTGAGGAGGGTTACTGCAATGATCCCAGCAGCAAGCCACCTCCATGGAACTCCCAGGTGTTTTCCGAGAAGAGTCCCCTCACAGAGCAGCCCCCCAACTTGGAACTGGCTGGCTCTCAGGCAATGTTTTCAG
Seq A exon
CAGGGGCCTCGGCCGATGACAGCTCCAGTACCTCGTCTGGGGAGTGGTACCAGAACTTCCAGCCACCACCCCAGCATCCTCCAGTGGAACAGTTTGAATGTCCAG
Seq C2 exon
GACCGCCTGACCTCCAAGCAGACTCCATTGATGATGATGAGGAAGACTACGATGACATTGGAGCAGCCTAGCCTGGGTCGCCGAGGCTCCTGGGTGACCCCTCCCTCTGCTCTCCTGTTCTACCACCCATCAACTTCTCAGAGGCTGAGGCCCCTGGCAGAGATGGAAGGGTGGGCATTCTCCCAGCCCCGCATCCTCCACCCATTGATTAACCTGCAGGAGCCTGGAACAGAAAGCAGGGCCAATGGTGTGAGTGCTGGGTTGAACGAACAGAGTCTGGCCACTTCTTGGTGGTGGTTGAGGGCCATGCTGGGTAACCCTGAGGCCTCATCTCACTCCATGTCATGTGCTTTGATCCCAAGTCTCAGGAAGCTGCTGAGGGACTGAGCAGCTCACCCGCTGCTGAAATACAGGCCCGAGGCCAGAGGCTGCCATTATCACTCAGCCTCAATACAACCCGGGGCTTTGCATGGGCATGGCTCCCTGGGCACTGTCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020884-'14-13,'14-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=1.000 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAGTCCCCTCACAGAGC
R:
AATGCCCACCCTTCCATCTCT
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]