HsaEX1007841 @ hg38
Exon Skipping
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102964502-102966387:-
Coord C1 exon
chr14:102966282-102966387
Coord A exon
chr14:102965505-102965639
Coord C2 exon
chr14:102964502-102964650
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTTTACTGTTATAGATG
3' ss Score
9.47
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
GGTCAGTGACGAGAAAGATGCCCGGGGTTACCTTCAAGCTCTTGCTTCCAAGATGACCGAAGAGCTCGAGGCTTTGAGGAGTTCTAGTCTGGGGTCAAGAACACTG
Seq A exon
ATGGAAAATGAAGCATTCTCAATTGTGTTCAATGAAAGGTTTTCAGTTTGTTTTAAAAAAGAAAAAACAGCAAGATGGCATCTCTGGACTTCTTTGATACCTCTCGAAAGTTGATGTCATACATTGGGCAACTCA
Seq C2 exon
GACCCGCTGTGGAAGGTGCGCCGCAGCCAGAAGCTGGACATGTCCGCGCGGCTGGAGCTGCAGTCGGCCCTGGAGGCGGAGATCCGGGCCAAGCAGCTTGTCCAGGAGGAGCTCAGGAAGGTCAAGGACGCCAACCTCACCTTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752-'40-40,'40-39,41-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF088265=DMPK_coil=PU(50.0=62.0)
Main Inclusion Isoform:
ENST00000361246fB11814
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGATGCCCGGGGTTAC
R:
CTTTCCAAGGTGAGGTTGGCG
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains