HsaEX1008161 @ hg38
Exon Skipping
Gene
ENSG00000219073 | CELA3B
Description
chymotrypsin like elastase family member 3B [Source:HGNC Symbol;Acc:HGNC:15945]
Coordinates
chr1:21986531-21998642:+
Coord C1 exon
chr1:21986531-21986683
Coord A exon
chr1:21995466-21995513
Coord C2 exon
chr1:21998151-21998642
Length
48 bp
Sequences
Splice sites
3' ss Seq
GGACTTTTTATTGTGTACAGGGG
3' ss Score
4.8
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGTGACTCTGGAGGACCCCTCAACTGCCCCACAGAGGATGGTGGCTGGCAGGTCCATGGCGTGACCAGCTTTGTTTCTGCCTTTGGCTGCAACACCCGCAGGAAGCCCACGGTGTTCACTCGAGTCTCCGCCTTCATTGACTGGATTGAGGAG
Seq A exon
GGGCTGTGCAGAATGGAAACCACACTTGCCTGTCTCCCAGGAAGCCAG
Seq C2 exon
AAACTACAGGGCAACAAGGCACCAGAGTCCCGGACTTAGGACCACTGTGTGTGATTCACCGTGAACACTGGCATATTAAAGGCTCTGAGAAGTCCTGTAGGAAAGGACAATTTGAACTTTGTTTGAGCTCATATTTTCCAATCCCATCTGACCTTTAGTTCTTCACTGAGTGCCCACTGGGTTATATTCTGGGAGCCGAGGCCACAGCAGTGAACAAAGCACACAAAACCCCCCGCCCCATGGGGGCTCCGTTCTAGTGGGTCCATTTATCATCAAACATCTATTAATATCTCTAGAATGTGCCCATCAGGACACCATCCAGATGCTGCTGCGCTTTTCCAGGCCACACAGAGGGGACACCCTCCAGGTGCATCCTGCATGAATATCAGGCTCAACCGTGCTTTCAGGGTAGGAAGCGGAGGGCATTTGAAGAGTCCTTTCCCTTCCTTCATTCATTTGTTGTCTCCTTGAATAAATGCTGTTGAAAACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000219073_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[96=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.583
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PD(20.4=94.1)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000400277fB12013
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACCAGCTTTGTTTCTGC
R:
GTCCTAAGTCCGGGACTCTGG
Band lengths:
136-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains