HsaEX1008974 @ hg38
Exon Skipping
Gene
ENSG00000112782 | CLIC5
Description
chloride intracellular channel 5 [Source:HGNC Symbol;Acc:HGNC:13517]
Coordinates
chr6:45892145-45903179:-
Coord C1 exon
chr6:45902925-45903179
Coord A exon
chr6:45901620-45901719
Coord C2 exon
chr6:45892145-45892232
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTTTTGTCATTCTCCTTAAGTTT
3' ss Score
6.26
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
ATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATCGAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCCTGAGCACAGCCATTTTGCCCCATCCCCGCTGCAGAAGGACTCAACCACTCCCCTAAGACTCCAGCTTCATAGACTCCTCTGTATCACTGCCTTGAGGCGCACTTTTTATAATCAAGCCTCATCTTGCTGGTATCATGGGAACTCCAGCCTGCTATCTTTCATGAAG
Seq A exon
TTTCATCTCCTAAAAAGCTTACCCAGCCTGAGCTTGGGGACCTGTGCAGAGGAAACTAAGAAAAATGCACTCATCAACTCCTTCTCCCAGTGAACGCCCG
Seq C2 exon
ATATAGTATGAGGCCCACAACAGTTGCTTATGTTCATAAGCAATAAGAGCTAGGATTTCAACCCAAAGACTGCCATCAAGTCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112782_MULTIEX1-5/6=4-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAGATCGAGTTGGCCT
R:
GCAACTGTTGTGGGCCTCATA
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains