HsaINT1007849 @ hg38
Intron Retention
Gene
ENSG00000112782 | CLIC5
Description
chloride intracellular channel 5 [Source:HGNC Symbol;Acc:HGNC:13517]
Coordinates
chr6:45901620-45903179:-
Coord C1 exon
chr6:45902925-45903179
Coord A exon
chr6:45901720-45902924
Coord C2 exon
chr6:45901620-45901719
Length
1205 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
CTTTTGTCATTCTCCTTAAGTTT
3' ss Score
6.26
Exon sequences
Seq C1 exon
ATGCCCGTGATGAGTTCACCAACACCTGTGCAGCTGACAGTGAGATCGAGTTGGCCTACGCTGATGTCGCCAAACGCCTCAGCCGATCCTGAGCACAGCCATTTTGCCCCATCCCCGCTGCAGAAGGACTCAACCACTCCCCTAAGACTCCAGCTTCATAGACTCCTCTGTATCACTGCCTTGAGGCGCACTTTTTATAATCAAGCCTCATCTTGCTGGTATCATGGGAACTCCAGCCTGCTATCTTTCATGAAG
Seq A exon
GTCAGCACCATCCCTGGCCTCCTCACATAGGAATCTAGCAGAAATGATAGACACAGTCCACCTTTCGGCCGGCCAGCCTGATCTGGGCTCAGCATGTTTGGGGTCAGTCAGTGTTGGAGAGCCCACATATGGGATTGCCACTAGCTTCTTCTGCCAATATCAAAATACCTTCTCAGATGCTTTAGAAACATGCAACACCAACTCCTTTTCTACCCTCCTCTCCGTCCATACCTACAAGGCCAAGGACAAACGCCATCTTCATCCTTCTTAGAAAGAGATCTATTACCCCATTAGGGGAGACAGAGAGAGTGAATGGAGGAGTACCGAGCTGGCTATGGACTTGGGTGTCTGGCAAACACAGCTTCAGTCTCACTACTTCTGACACTCTGGTTATTGGGCACTAAGGGCCAGACTGGAAAGTCACTTGAGACACATTCTCAGTTTGTTGCAGTGCCAGGAATGCTGCGCTGCTGCTGCTGCGCACCTGGCCCATGCTGTCCCTGGCTTCCATGCCGTCCAGGCCCTGCCAGAAAAGGAAATTGGCATGCAATTCTAAACTGCAGTGACTGGGATGGGAGGGGAGGGGAGCAGTGTTGATGCCAAAATACCCACGGGGTCTACCAGCCATGGGGTTTGCTTGCTTAGGAGTAGTTGTTTCAGAGGTGATTACAGGCCTGGGTTTGACTGTGCTTACCAATGAGTGGTTTTTGAGCTATGAGAAAGTGGATGGGAGTGGGAGGAGGAGAGATGGGTGAAGACAAAAGAGTTCTTTATGAGCCTCGATGTTCCCTGGTAAACTTTTAAAAAGGCCTTCTCTCATGATCTAAGTCTTGGACTGGTGGCATCATGTAACTGCTAACCTTACAGTAAAAACCCAAGAATGGGTCAAAAATGTCTTCCCAGTTTCTCCAAGCTGCTTCTGGAATGCAGGTCTGTCGGCTGGGTGCTCTCCAGCAGCTGCTCCTGCCTGATTCAACTGTAGCCTGTAATGGGTAAAAGCCACATTTAGGAGGTGGTCTGATCATAGAACACCTTAGGAAGAAAGTCCATGAGACTTTCTGACTAGGAAACCATGTGGTTTGAACTTGAAGAAAAATGTAGACCCATCTGGGTTAATTTTCCTACAATCTGACTCAACTGCCAGGTGAAAAAAAAAAGGAAAAATTTTTAAGCTAATATTTCACTCTTTTGTCATTCTCCTTAAG
Seq C2 exon
TTTCATCTCCTAAAAAGCTTACCCAGCCTGAGCTTGGGGACCTGTGCAGAGGAAACTAAGAAAAATGCACTCATCAACTCCTTCTCCCAGTGAACGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112782:ENST00000487396:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCACCAACACCTGTGC
R:
GCGTTCACTGGGAGAAGGAGT
Band lengths:
342-1547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains