HsaEX1009005 @ hg38
Exon Skipping
Gene
ENSG00000113240 | CLK4
Description
CDC like kinase 4 [Source:HGNC Symbol;Acc:HGNC:13659]
Coordinates
chr5:178619838-178621325:-
Coord C1 exon
chr5:178621225-178621325
Coord A exon
chr5:178620526-178620673
Coord C2 exon
chr5:178619838-178619896
Length
148 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTATCTCCCACAGGAC
3' ss Score
12.75
5' ss Seq
TGTGTAATT
5' ss Score
-1.36
Exon sequences
Seq C1 exon
AGAAGCCTGTAACATAAAGTATCAAGTCTTAAACCAGTGATTCTCCAACTTTAGTGTGAATAAGAATCACCTTGGAGGTATGCTGACCAGATTTACAGTCA
Seq A exon
GACCTGTGTGGATATAAAAACGAATGCCCTTACCCTCATCCGTCTTGGCTATTTGAAAGGCTATAGTGAAATATTCACTGGGCATTCAGTGGATATTTTAAAAAATTAAATCAGTCTGTTCATCCTGTCTACCCTGTCCATAGCCTGT
Seq C2 exon
TGCTCCATGTGCATCCCTCTTGAAGCTTCGCACTCTGTTGAAGAGGACACTCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113240-'14-17,'14-15,15-17
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTGTAACATAAAGTATCAAGTCT
R:
CTGGGATGAGTGTCCTCTTCA
Band lengths:
157-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains