HsaEX1009199 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17409293-17415881:+
Coord C1 exon
chr9:17409293-17409473
Coord A exon
chr9:17411465-17411587
Coord C2 exon
chr9:17415788-17415881
Length
123 bp
Sequences
Splice sites
3' ss Seq
ACCTCTCCTCCTCCTATCAGGGT
3' ss Score
11.39
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAGTGATTCTGAAGCACAGACCTCTCAAACTTTGGGAACAATTATTGTAGAAACATCCCAGAAAATAAGTCCTACGGAAGATGGAAAAGACCAGAAAGAAAGTGATCCAACAGAAGACAGCCAAACACAAGGAAAAGAAATAGTACAGACATATTTAAATATAGATGGCAAGACCCCAAAG
Seq A exon
GGTGATGCCAGAGAGGACCAAGTGTGGAGCTAGTGATAATGACCTCCTCCTGGGATCCCTAACCCCTGGGCTGCAGACTGGCACCTGTTGTGGCCTGCTAGGAACTGGCTTACACAGCAGAAG
Seq C2 exon
GACTATTTTCATGATAAGAATGCCAAAAAACCAACTTTTCAAAAGAAGAATTGCAAGATGCAAAAGAGTTCACATACAGCAGTTCCTACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000380647fB12645
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACAGACCTCTCAAACTTTGG
R:
AGGAACTGCTGTATGTGAACTCT
Band lengths:
256-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains