HsaEX1009201 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17143288-17298352:+
Coord C1 exon
chr9:17143288-17143376
Coord A exon
chr9:17166818-17166930
Coord C2 exon
chr9:17298190-17298352
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTCCCATTACATATTCTTAGGAG
3' ss Score
5.35
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
GCTGATAAAGAATTTGTATGGTCTTTGTGGAAACGTCTCCAGGTTACAAACCCAGATCTCACACAAGTGGTCAGTTTGGTTGTGGAAAG
Seq A exon
GAGGCCACCGGAAGATGTGTACCACCAAAACGAAGAATATACCAAAAAAGATAAAAAGTTGGGATTGAGAAAATGTGAGATCCAACACATGAATAATATAAAGATATTCCAAG
Seq C2 exon
GAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAGCTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCTGAAAGTATATCATATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX2-1/8=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.205 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000380647fB12647
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAATTTGTATGGTCTTTGTGGA
R:
TGATATGATATACTTTCAGCTGTGTG
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains