HsaEX1009761 @ hg38
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr9:129107814-129111189:-
Coord C1 exon
chr9:129110958-129111189
Coord A exon
chr9:129110483-129110612
Coord C2 exon
chr9:129107814-129108077
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCAGCGACCTTGGCCCGAAGGCT
3' ss Score
3
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGTCCCGGAGTACCACCTGTCATCTTTGTGGGTGGTACTGACCCTAACCCAAGGAATATTAGAGGACATTCCCCGGTCAACATGGTTGTGTTTTCCTATCACTCTAAGAGTTAGGCTCAAGGACACCAGACGGAGTTGGAAAGGTGCACACCACTACCTCCAACAGCTTAGAAGACATGTGGGGACAGGGGAGAGACAGCTGGACGGTGACCTCCTCCTTCCTCCTCCACAG
Seq A exon
GCTCTAGCAAGGACCCACCGACCCCAGCCGCGGCGGCGGCGGCGCGGACTTTGCCCGGTGTGTGGGGCGGAGCGGACTGCGTGTCCGCGGACGGGCAGCGAAGATGTTAGCCTTCGCTGCCAGGACCGTG
Seq C2 exon
GTGAAGCCTCTGGGCTTCCTGAAGCCCTTCTCCTTGATGAAGGCTTCCAGCCGCTTCAAGGCACACCAGGATGCACTGCCACGGCTGCCCGTGCCCCCTCTCCAGCAGTCCCTGGACCACTACCTGAAGGCGCTGCAGCCCATCGTGAGTGAGGAGGAGTGGGCCCACACCAAGCAGCTGGTGGATGAGTTTCAGGCCTCAGGAGGTGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGTCGGGCCAGGAAGACGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321_MULTIEX1-1/4=C1-C2
Average complexity
C2
Mappability confidence:
80%=100=80%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCACTACCTCCAACAGCT
R:
ACTCCTCCTCACTCACGATGG
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains