DmeEX6018763 @ dm6
Exon Skipping
Gene
FBgn0037440 | CG1041
Description
The gene Carnitine O-Acetyl-Transferase is referred to in FlyBase by the symbol DmelCRAT (CG1041, FBgn0037440). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is 3R:6371026..6376044. Its molecular function is described by: carnitine O-acetyltransferase activity. It is involved in the biological process described with: fatty acid beta-oxidation; carnitine metabolic process, CoA-linked. 8 alleles are reported. The phenotypes of these alleles manifest in: mitochondrion; embryonic/larval fat body. The phenotypic classes of alleles include: fertile; size defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 06-18 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in adult male stages.
Coordinates
chr3R:6372170-6376044:-
Coord C1 exon
chr3R:6375883-6376044
Coord A exon
chr3R:6373302-6373380
Coord C2 exon
chr3R:6372170-6373236
Length
79 bp
Sequences
Splice sites
3' ss Seq
ACCATTTCTCCGTTTTGCAGCCC
3' ss Score
10.23
5' ss Seq
TTGGTAGTG
5' ss Score
-1.33
Exon sequences
Seq C1 exon
TCCCTCGCCAGAGAAGAGAGCCCAATGGAATCCACATGCAATCGTTTTATTCTTGAGAAGATCGCGAAGCGTACGGCCGCATATAACATAAGAAGAATTTCATAACGGAGTGTTGTTAAAAGAAACTATATCATATCAAATATTAATATCAATAAAAAAAAT
Seq A exon
CCCAACGTCTGAGCGAATCCTCGAGAAAACCGAAGCCGAGATGAAGTTCCGTGGCAATGGAAAGCTTTTGTGGAATTTG
Seq C2 exon
ACCAAGAACTCCTTGGCCCAGCAGTCTCCAAATGGGATCGCCAAGAAAGTGCTGCCCGCTAGCAGCTACAGCACCGTCCAGAAGACCATTCCCTTGGAGCAGCCGAATCTGCTGAAGTACCACGTCCTGCCGCTGGAGGAAACGCTGAACCGCTTCATGACCACTGTGGAACCTCTCCTGACGCCTGAGGAGTTTCAACGGCAAAAGGGAATCACCTCCGAGTTTTTAAAAAAGCAGGGACGCGAACTGCAGCTGCTCCTGGAAGAAACCGGCAGCAAGGAGAAGAATTGGCTGGCCCACCGCTGGCTGAAGGCTGCCTATTTGACCTATCGAGATCCAGTCACCGTGTTCGTGAGTCCTGGCATGACCTTTCCCAAGCAAAACTTCAGGGACTCACGTGCTTTCGTGGACTATACCGCCAGGGTTATCTATGGACTGGGAGAATTCAACGACATGGTGCACGCCAACAAAATTCCGATCGTTAAAATGGGCAAGAACGA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0037440-'0-4,'0-3,6-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.266 C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(55.5=89.9)
Main Inclusion Isoform:
FBpp0312437

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0081231, FBpp0110071, FBpp0310697
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAATGGAATCCACATGC
R:
TCCCATTTGGAGACTGCTGGG
Band lengths:
181-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)