RnoEX0024397 @ rn6
Exon Skipping
Gene
ENSRNOG00000018145 | Crat
Description
carnitine O-acetyltransferase [Source:RGD Symbol;Acc:1303031]
Coordinates
chr3:8978837-8981362:-
Coord C1 exon
chr3:8981336-8981362
Coord A exon
chr3:8979755-8979891
Coord C2 exon
chr3:8978837-8979100
Length
137 bp
Sequences
Splice sites
3' ss Seq
ATCTTGTCTTCTCTTTCCAGTCC
3' ss Score
10.42
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGTTAGCTTTTGCTGCCAGAACCGTG
Seq A exon
TCCAGGCAGGTGGCTGCTCTTGCTAGTTTCTGCTCGTCCAATTGGTAGCACAGTTAGGCTTAGAGATCCAGCCCAGGCAGACAGACAGGGCTCACATCCTCAGTCCTGCCATGGAGGACGAGCAGCAGAGAGAGAAG
Seq C2 exon
GTGAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTGTCTGGTCGATTTAAGGCCCACCAGGATGCACTGCCACGGCTGCCTGTGCCTCCACTTCAGCAATCCCTGGACCATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGACGAGTTTCAGACCTCAGGGGGTGTAGGGGAACGCCTGCAGAAGGGATTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018145_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.254 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Main Inclusion Isoform:
ENSRNOT00000086717fB3564
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCTGCCAGAACCGTG
R:
CAATCCCTTCTGCAGGCGTTC
Band lengths:
254-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]