Special

MmuEX0012659 @ mm9

Exon Skipping

Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30268503-30270962:-
Coord C1 exon
chr2:30270832-30270962
Coord A exon
chr2:30269380-30269516
Coord C2 exon
chr2:30268503-30268766
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTCTTCTCTTTCCAGTCC
3' ss Score
10.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AACCGGAGCCGCGAACCCACTGACCCCAGCACCCCAGCAGTGGCGCAGTCTTTACCCAGCGCGAGGGGCGGAGCGGACCAAGTGTCCGCAAACAGACTGGGACGATGTTAGCCTTTGCTGCCAGAACCGTG
Seq A exon
TCCAGGCAGGTGGCCGCTCTTGCTAGTTTCTGCTCATCCAATTGGTAGCACAGTTAGGCTTAGAGGTCCAGCCCAGGCAGACAGACAGGGCTCACATCCTCAGTCCTGCCATGGAGGACGAGCAGCAGAGAGAGAAG
Seq C2 exon
GTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. ATG)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.545 C2=0.083
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000118507





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028207





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000117593
          









    
Other Skipping Isoforms:
ENSMUSP00000028207f2015A, ENSMUSP00000099919
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr9:129108763-129108903 
ALTERNATIVE
HsaEX0017133
(CRAT)
Human
(hg19)
chr9:131871042-131871182 
ALTERNATIVE
HsaEX0017133
(CRAT)
Rat
(rn6)
chr3:8979755-8979891 
ALTERNATIVE
RnoEX0024397
(Crat)
Cow
(bosTau6)
chr11:99587715-99587855 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
chr3R:6373302-6373380 
HIGH PSI
DmeEX6018763
(CG1041)




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GACCAAGTGTCCGCAAACAGA

				
R: 
ATCCACCAGTTGCTTGGTGTG

				
Band lengths: 
242-379

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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