HsaEX0017133 @ hg19
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]
Coordinates
chr9:131870093-131871556:-
Coord C1 exon
chr9:131871458-131871556
Coord A exon
chr9:131871042-131871182
Coord C2 exon
chr9:131870093-131870356
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCTTCTCTTTCCAGCCC
3' ss Score
10.82
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GACCGATCCCAGGGCTGTGGTGTAACCTCAGCGGCCAGGCAGTCTCTGTCCTCCAGCCAAGTTTTCCCTCATCAAAACGATCTTCGCAGATTCTGACAG
Seq A exon
CCCAGGCAAGTGGCTGCCTCTGGCTAGGTTCTGCTCACTCACTTTGTAGCACAGTTAGGCTTAGAGATCCAGCCAAGGCAGACAGACAGGGCCCAGAACCTCAGTCCTGCCATGGAGGAGGACGGGCAGCAGAGAGAGAAG
Seq C2 exon
GTGAAGCCTCTGGGCTTCCTGAAGCCCTTCTCCTTGATGAAGGCTTCCAGCCGCTTCAAGGCACACCAGGATGCACTGCCACGGCTGCCCGTGCCCCCTCTCCAGCAGTCCCTGGACCACTACCTGAAGGCGCTGCAGCCCATCGTGAGTGAGGAGGAGTGGGCCCACACCAAGCAGCTGGTGGATGAGTTTCAGGCCTCAGGAGGTGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGTCGGGCCAGGAAGACGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'2-10,'2-8,4-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=0.129 A=1.000 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCAAGTTTTCCCTC
R:
GGCCTGAAACTCATCCACCAG
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)