MmuEX0012659 @ mm10
Exon Skipping
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30412983-30415442:-
Coord C1 exon
chr2:30415312-30415442
Coord A exon
chr2:30413860-30413996
Coord C2 exon
chr2:30412983-30413246
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTCTTCTCTTTCCAGTCC
3' ss Score
10.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
AACCGGAGCCGCGAACCCACTGACCCCAGCACCCCAGCAGTGGCGCAGTCTTTACCCAGCGCGAGGGGCGGAGCGGACCAAGTGTCCGCAAACAGACTGGGACGATGTTAGCCTTTGCTGCCAGAACCGTG
Seq A exon
TCCAGGCAGGTGGCCGCTCTTGCTAGTTTCTGCTCATCCAATTGGTAGCACAGTTAGGCTTAGAGGTCCAGCCCAGGCAGACAGACAGGGCTCACATCCTCAGTCCTGCCATGGAGGACGAGCAGCAGAGAGAGAAG
Seq C2 exon
GTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-'2-14,'2-12,7-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.485 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAAGTGTCCGCAAACAGA
R:
ATCCACCAGTTGCTTGGTGTG
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types