HsaEX0017133 @ hg38
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr9:129107814-129110804:-
Coord C1 exon
chr9:129110483-129110804
Coord A exon
chr9:129108763-129108903
Coord C2 exon
chr9:129107814-129108077
Length
141 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCTTCTCTTTCCAGCCC
3' ss Score
10.82
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATCGATGCCCCGTCCCCGCCCCACAGCCAACCTCCCGGGCACCGTTGCCCGCCCGGGGCCCGCTACCGGCCCAGGCCCCGCCTCGCGAGTCCTCCTCCCCGGGTGCCTTCCCGCAGCCCGCTCGGCCCAGAGGGTGGGCGCGGGGCTGCCTCTACCGGCTGGCGGCTGTAACTCAGCGACCTTGGCCCGAAGGCTCTAGCAAGGACCCACCGACCCCAGCCGCGGCGGCGGCGGCGCGGACTTTGCCCGGTGTGTGGGGCGGAGCGGACTGCGTGTCCGCGGACGGGCAGCGAAGATGTTAGCCTTCGCTGCCAGGACCGTG
Seq A exon
CCCAGGCAAGTGGCTGCCTCTGGCTAGGTTCTGCTCACTCACTTTGTAGCACAGTTAGGCTTAGAGATCCAGCCAAGGCAGACAGACAGGGCCCAGAACCTCAGTCCTGCCATGGAGGAGGACGGGCAGCAGAGAGAGAAG
Seq C2 exon
GTGAAGCCTCTGGGCTTCCTGAAGCCCTTCTCCTTGATGAAGGCTTCCAGCCGCTTCAAGGCACACCAGGATGCACTGCCACGGCTGCCCGTGCCCCCTCTCCAGCAGTCCCTGGACCACTACCTGAAGGCGCTGCAGCCCATCGTGAGTGAGGAGGAGTGGGCCCACACCAAGCAGCTGGTGGATGAGTTTCAGGCCTCAGGAGGTGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGTCGGGCCAGGAAGACGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'1-11,'1-9,6-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.750 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTAGCAAGGACCCACCGA
R:
TTCAGGTAGTGGTCCAGGGAC
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development