HsaEX0017132 @ hg19
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]
Coordinates
chr9:131870093-131873083:-
Coord C1 exon
chr9:131872762-131873083
Coord A exon
chr9:131871458-131871556
Coord C2 exon
chr9:131870093-131870356
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCACCAACCCTAATTTCAGGAC
3' ss Score
6.48
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
ATCGATGCCCCGTCCCCGCCCCACAGCCAACCTCCCGGGCACCGTTGCCCGCCCGGGGCCCGCTACCGGCCCAGGCCCCGCCTCGCGAGTCCTCCTCCCCGGGTGCCTTCCCGCAGCCCGCTCGGCCCAGAGGGTGGGCGCGGGGCTGCCTCTACCGGCTGGCGGCTGTAACTCAGCGACCTTGGCCCGAAGGCTCTAGCAAGGACCCACCGACCCCAGCCGCGGCGGCGGCGGCGCGGACTTTGCCCGGTGTGTGGGGCGGAGCGGACTGCGTGTCCGCGGACGGGCAGCGAAGATGTTAGCCTTCGCTGCCAGGACCGTG
Seq A exon
GACCGATCCCAGGGCTGTGGTGTAACCTCAGCGGCCAGGCAGTCTCTGTCCTCCAGCCAAGTTTTCCCTCATCAAAACGATCTTCGCAGATTCTGACAG
Seq C2 exon
GTGAAGCCTCTGGGCTTCCTGAAGCCCTTCTCCTTGATGAAGGCTTCCAGCCGCTTCAAGGCACACCAGGATGCACTGCCACGGCTGCCCGTGCCCCCTCTCCAGCAGTCCCTGGACCACTACCTGAAGGCGCTGCAGCCCATCGTGAGTGAGGAGGAGTGGGCCCACACCAAGCAGCTGGTGGATGAGTTTCAGGCCTCAGGAGGTGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGTCGGGCCAGGAAGACGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'1-10,'1-5,2-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.129 C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGCTCTAGCAAGGACCCA
R:
TCAAGGAGAAGGGCTTCAGGA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)