HsaEX0017134 @ hg19
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]
Coordinates
chr9:131870093-131871556:-
Coord C1 exon
chr9:131871458-131871556
Coord A exon
chr9:131870687-131870757
Coord C2 exon
chr9:131870093-131870356
Length
71 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCTCAACCTGGAAAGGGT
3' ss Score
3.62
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GACCGATCCCAGGGCTGTGGTGTAACCTCAGCGGCCAGGCAGTCTCTGTCCTCCAGCCAAGTTTTCCCTCATCAAAACGATCTTCGCAGATTCTGACAG
Seq A exon
GGTGGGAGAAAAGGACGTGGGGACCTCCAAGAGGGACAGTCACCACTCTGCTGGCTGGCTCCTCTTCCAGG
Seq C2 exon
GTGAAGCCTCTGGGCTTCCTGAAGCCCTTCTCCTTGATGAAGGCTTCCAGCCGCTTCAAGGCACACCAGGATGCACTGCCACGGCTGCCCGTGCCCCCTCTCCAGCAGTCCCTGGACCACTACCTGAAGGCGCTGCAGCCCATCGTGAGTGAGGAGGAGTGGGCCCACACCAAGCAGCTGGTGGATGAGTTTCAGGCCTCAGGAGGTGTAGGGGAGCGCCTGCAGAAGGGGCTGGAGCGTCGGGCCAGGAAGACGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'2-10,'2-9,5-10
Average complexity
C3
Mappability confidence:
89%=80=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.049
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGCCAAGTTTTCCCTC
R:
TTCAGGTAGTGGTCCAGGGAC
Band lengths:
178-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)