MmuEX6100273 @ mm10
Exon Skipping
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30412983-30415442:-
Coord C1 exon
chr2:30415312-30415442
Coord A exon
chr2:30414268-30414360
Coord C2 exon
chr2:30412983-30413246
Length
93 bp
Sequences
Splice sites
3' ss Seq
CTTGCACCATTCCCAAGCAGGGC
3' ss Score
4.28
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
AACCGGAGCCGCGAACCCACTGACCCCAGCACCCCAGCAGTGGCGCAGTCTTTACCCAGCGCGAGGGGCGGAGCGGACCAAGTGTCCGCAAACAGACTGGGACGATGTTAGCCTTTGCTGCCAGAACCGTG
Seq A exon
GGCTGATTTCAGGGCCACAGGTTAGCGGCCAGCCTGTTTCCACCCTCCAGCCAAGTTTTCCCACATCAAAAAGATCTATGAAGATTTTGACAG
Seq C2 exon
GTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853-'2-14,'2-9,5-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACGATGTTAGCCTTTGC
R:
GCTGCAGTGCCTTGAGGTAAT
Band lengths:
173-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types