RnoALTD0007762-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018145 | Crat
Description
carnitine O-acetyltransferase [Source:RGD Symbol;Acc:1303031]
Coordinates
chr3:8978837-8981436:-
Coord C1 exon
chr3:8981336-8981436
Coord A exon
chr3:8981207-8981335
Coord C2 exon
chr3:8978837-8979100
Length
129 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GGCTGCTCTGCATCCCGCAGGTG
3' ss Score
9.23
Exon sequences
Seq C1 exon
ACCCCAGCAGTGGCGCAGAGTTTACCCAGCGTGAGGGGCGGAGCGGACCCAGTGTCCGCAAACAGATTGGGACAATGTTAGCTTTTGCTGCCAGAACCGTG
Seq A exon
GTGAGTACGCCCAGAAGGGCCCTGGACGGGATAAGACGGGCGGGCCTCGGGCAGCAGGGTAGCAGCGGTCAAGAGAACCCCTACACCGGCTGATAGGGTGCAATCTGCAAGGTGGGCAGAGGAGACCAG
Seq C2 exon
GTGAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTGTCTGGTCGATTTAAGGCCCACCAGGATGCACTGCCACGGCTGCCTGTGCCTCCACTTCAGCAATCCCTGGACCATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGACGAGTTTCAGACCTCAGGGGGTGTAGGGGAACGCCTGCAGAAGGGATTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018145-0-9,1-9,2-9-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGTCCGCAAACAGATT
R:
AGGTCTGAAACTCGTCCACCA
Band lengths:
253-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]