HsaEX1010028 @ hg38
Exon Skipping
Gene
ENSG00000271133 | CTA-293F17.1
Description
NA
Coordinates
chr7:20328299-20331681:-
Coord C1 exon
chr7:20331650-20331681
Coord A exon
chr7:20329367-20329513
Coord C2 exon
chr7:20328299-20328856
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCGAAACTCCCCCTTTCAGGTG
3' ss Score
8.13
5' ss Seq
GAGGTGATG
5' ss Score
4.44
Exon sequences
Seq C1 exon
GCGGACCCCGCGGCTCGGAGCAAGCGGTGCAG
Seq A exon
GTGTGGACCGCACAACGGGGTGCACAGGATTAGTTAAGCAAAGCAGGAACCCAGCTGGAAAATTAAACGAGCCCTGGATCTGCAAAGCAGGTCCCTTCGCGAGACCAAAGCCGTGATCCCAACCTTAGCAACATAATTCTACTGGAG
Seq C2 exon
GTGTTGATATATATACTAATCCAGAACAACCATGTAGCAAGAGGAATAAAATGAAGTTCAGAAGTCTGTTTCGGGAAATTTTGAAGCCCTTTAGAAAGAAAGATTTCTACATTTTGTTACATGAAATTCATGCAAATATATGTCAGGTGCCAGTGCTATGGAGTTGTTGAAGAATAAGCACAATACCATTTATTACCACTTCTCAGTTGTAAAGAGGCTGTAACTCTGGTTGTCGAAATAAAATAAAATGAAATCTCCTAGATGTGACACTGTGACCCCTGCCAGTTATTTACAAACAAGTTATCTGCACATTTTGGGCTGTAAACATAAAAGTAAACTCTCTGAAAGACTGCAAATCATCTTTAGGGTTTTCTTAAAGTAAATACAACTAGTGGCCCAGGAACCAAAAGTTTGCTTGTTTCCAGTTAATGTCACTGGTCACCATAACTCACCCTTTTTCCTATGAGGAAATGTACAGCATATTTTAAAGAAATGCAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000271133_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains