HsaEX0032493 @ hg38
Exon Skipping
Gene
ENSG00000105855 | ITGB8
Description
integrin subunit beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]
Coordinates
chr7:20330702-20363722:+
Coord C1 exon
chr7:20330702-20330808
Coord A exon
chr7:20331496-20331933
Coord C2 exon
chr7:20363637-20363722
Length
438 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGTCCCGGAGCAGGCT
3' ss Score
5.46
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CTGCCCGGGCTGCAGCCGCGCCTGCGGGCAGCCGAGGCGAGGCGCTCCGGTAGCGTGGGGAGGTTTCCTAGCAACTCTCTGCCCTGAGTGCACCCGGCTACCCGCAG
Seq A exon
GCTGCGGAGCCCTTGCAGAGCCCTCTCTCCAGTCGCCGCCGGGGCCCTTGGCCGTCGAAGGAGGTGCTTCTCGCGGAGACCGCGGGACCCGCCGTGCCGAGCCGGGAGGGCCGCAGGGGCCCTGAGATGCCGAGCGGTGCCCGGGCCCGCTTACCTGCACCGCTTGCTCCGAGCCGCGGGGTCCGCCTGCTAGGCCTGCGGAAAACGTCCTAGCGACACTCGGCCCGCGGGCCCCGAGGTGCGCCCGGGAGGCGCGAGCCCGCGTCCGGAAGGCAGTCAGGCGGCGGGCGCGGGGCGGGCTGTTTTGCATTATGTGCGGCTCGGCCCTGGCTTTTTTTACCGCTGCATTTGTCTGCCTGCAAAACGACCGGCGAGGTCCCGCCTCGTTCCTCTGGGCAGCCTGGGTGTTTTCACTTGTTCTTGGACTGGGCCAAGGTG
Seq C2 exon
AAGACAATAGATGTGCATCTTCAAATGCAGCATCCTGTGCCAGGTGCCTTGCGCTGGGTCCAGAATGTGGATGGTGTGTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105855_MULTIEX1-1/6=C1-4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0036213=Integrin_beta=PU(4.1=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development