HsaEX0032493 @ hg19
Exon Skipping
Gene
ENSG00000105855 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:6163]
Coordinates
chr7:20369310-20403345:+
Coord C1 exon
chr7:20369310-20370431
Coord A exon
chr7:20371119-20371556
Coord C2 exon
chr7:20403263-20403345
Length
438 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGTCCCGGAGCAGGCT
3' ss Score
5.46
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAGGGCGTTGGGGGCAGGGGAGGTCCCTTGACTCCACTTTGTATGCAGCAGCTGCGGGGCAGTGAGTATCTCCGAACAAAGCGGCGAGCAGCGCGGGGGTGAGAGATTGGGGTTTGCTCGCAGCTGCCGCTGGCGCTGAGCGAGTCTCCCACCACCCCCGCGAGCGTTGGGGTGCAAGGATTCGGGGGAGGAGGGAGAAGGGAACGAGGCGTGCCATTCCTGTTGCGCGGCTACGCTTCAGGAGTTCTTGTGAACGATGGGAATGGCAACTATCAGAGCCAAGGGGGAAAAGAAAGAGCTGGAGTGAGCAAAACAAAGAGCGAGTGTGGGCCGCGGTGACTTCATGCCTCACCAATGTCCCGCCCACGCTGCTCCGAGCTGTTACTGCTGCTCCTGCCCGGGCTGCAGCCGCGCCTGCGGGCAGCCGAGGCGAGGCGCTCCGGTAGCGTGGGGAGGTTTCCTAGCAACTCTCTGCCCTGAGTGCACCCGGCTACCCGCAG
Seq A exon
GCTGCGGAGCCCTTGCAGAGCCCTCTCTCCAGTCGCCGCCGGGGCCCTTGGCCGTCGAAGGAGGTGCTTCTCGCGGAGACCGCGGGACCCGCCGTGCCGAGCCGGGAGGGCCGCAGGGGCCCTGAGATGCCGAGCGGTGCCCGGGCCCGCTTACCTGCACCGCTTGCTCCGAGCCGCGGGGTCCGCCTGCTAGGCCTGCGGAAAACGTCCTAGCGACACTCGGCCCGCGGGCCCCGAGGTGCGCCCGGGAGGCGCGAGCCCGCGTCCGGAAGGCAGTCAGGCGGCGGGCGCGGGGCGGGCTGTTTTGCATTATGTGCGGCTCGGCCCTGGCTTTTTTTACCGCTGCATTTGTCTGCCTGCAAAACGACCGGCGAGGTCCCGCCTCGTTCCTCTGGGCAGCCTGGGTGTTTTCACTTGTTCTTGGACTGGGCCAAGGTG
Seq C2 exon
ACAATAGATGTGCATCTTCAAATGCAGCATCCTGTGCCAGGTGCCTTGCGCTGGGTCCAGAATGTGGATGGTGTGTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105855_MULTIEX1-1/2=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0036213=Integrin_beta=PU(4.1=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGAGAAGGGAACGAG
R:
CACAGGATGCTGCATTTGAAGA
Band lengths:
349-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)