HsaEX0032487 @ hg19
Exon Skipping
Gene
ENSG00000105855 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:6163]
Coordinates
chr7:20371600-20403345:+
Coord C1 exon
chr7:20371600-20371646
Coord A exon
chr7:20379896-20380091
Coord C2 exon
chr7:20403260-20403345
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTATCGTTTGTTTATTCTAGAGG
3' ss Score
7.18
5' ss Seq
TAGGTATGT
5' ss Score
7.76
Exon sequences
Seq C1 exon
GTCTTGGGCTGGCACGAAGAGCTGCCCGGCCAGAGCATCCCGGCCAG
Seq A exon
AGGATTGCCAAAAAATTCACAGTCTCGTGATAGTACAGGGTAAGAAAGCAGAGTAGCTGTCAAGGGCTAGTTCAAGTCAAAGCCTATGGAAGAGACCGAGTTTGGAAGTGGAGAGAAGGGCTGGTGATGAAGACAGGAGGATGAAAAACTAGAAATATTCCAGCTCTGAAGAACTGTACCAAATATGTCATATTAG
Seq C2 exon
AAGACAATAGATGTGCATCTTCAAATGCAGCATCCTGTGCCAGGTGCCTTGCGCTGGGTCCAGAATGTGGATGGTGTGTTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105855-'1-5,'1-1,2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0036213=Integrin_beta=PU(4.1=58.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGGCTGGCACGAAGAG
R:
CTCTTGAACACACCATCCACA
Band lengths:
131-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)