HsaEX1010264 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr19:24057931-24063941:+
Coord C1 exon
chr19:24057931-24058106
Coord A exon
chr19:24058266-24058300
Coord C2 exon
chr19:24063816-24063941
Length
35 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGATTTAACCCACAGATG
3' ss Score
8.08
5' ss Seq
TAGGTGATG
5' ss Score
3.49
Exon sequences
Seq C1 exon
GTGCAGTTTTGACACACTTCTGTCTAGCAGCTGAGTATTGTGATCTTCAGAACTGGCCCAGCCTACAAATAGGATTGTGCCACACTGCTGGACCCAGCACCTAGATGATGTAACTATTCTCCTGCCTTGGTGCTACTCAAAAAAGACATTAACATATCTCAGAGCCTTGCACCCAG
Seq A exon
ATGGAATCGTGACATATCGCTGCACCAGAAACTAG
Seq C2 exon
AAGGCATTGAGACATGGCTGGGCTCAGCACTAAGAAGATGTGAGTCCTCTGCCTGAAGCCTGACCACAGGGAGCATTGTGACACATTTCTTGACCCATTACAATCTCTTCTACGGGCAAAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000268362_MULTIEX2-7/10=6-9
Average complexity
C2
Mappability confidence:
97%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCAGCACCTAGATGA
R:
GAGCCCAGCCATGTCTCAATG
Band lengths:
114-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains