HsaEX0073267 @ hg38
Exon Skipping
Gene
ENSG00000213096 | ZNF254
Description
zinc finger protein 254 [Source:HGNC Symbol;Acc:HGNC:13047]
Coordinates
chr19:24049405-24106066:+
Coord C1 exon
chr19:24049405-24049548
Coord A exon
chr19:24103747-24103867
Coord C2 exon
chr19:24105940-24106066
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTTTTTTTTTTTGAGATG
3' ss Score
4.8
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
Exon sequences
Seq C1 exon
TCCAGATGTATAATCTCATCCCTGAACATTTCTGATGGTGTGATTATGACATGTGACTTTATCTGGCAACAGAGTGAGTTGTTGCTCCCGCCTGAGCCCAGCCCCCAGAAAGGATTGTGACATATCGTTGGACCCAGAATTGAG
Seq A exon
ATGGAGTCTCGCTCTGTCATCCAGGCTGGAGTCAATGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGCGATTACAG
Seq C2 exon
GGACTGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAACACCTGGACATTGCACAGCAGAATTTATATAGAAATGTGATGTTAGAGAACTACAGAAACCTGGCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213096_MULTIEX1-5/8=2-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.333 C2=0.034
Domain overlap (PFAM):
C1:
NA
A:
PF139001=GVQW=WD(100=78.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAACATTTCTGATGGTGTGA
R:
AGGAAGGCCAGGTTTCTGTAGT
Band lengths:
250-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development