HsaALTD1044193-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000213096 | ZNF254
Description
zinc finger protein 254 [Source:HGNC Symbol;Acc:HGNC:13047]
Coordinates
chr19:24087253-24129961:+
Coord C1 exon
chr19:24087253-24087285
Coord A exon
chr19:24087286-24087337
Coord C2 exon
chr19:24126254-24129961
Length
52 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
3' ss Seq
TATTTTTATTTTTTTTTCAGGTA
3' ss Score
11.09
Exon sequences
Seq C1 exon
GAGGCCCAGCCTCTGTGGCGCTGTTACCAGCAG
Seq A exon
GTATTGGAGATCCACAGCTAAGATGCCAGGACCCCCTAGAAGCCTAGAAATG
Seq C2 exon
GTATGTGTCCTCATTTTGCTCAAGACCTTTGGCCAGAGCAGGGCATGGAAGATTCTTTTCAAAAAGCAATACTGAGAAGATATGGAAAATATGGACATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGATGAGTATAAGGTGAACAAAGAAGGTTATAATGGACTTAACCAGTGTTTCACAACTGCCCAGAGCAAAGTATTTCAATGTGATAAATATTTGAAAGTCTTCTATAAATTTTTAAATTCAAACAGACCTAAGATAAGACATACTGAAAAGAAATCTTTCAAATGTAAAAAACGTGTCAAATTATTTTGCATGCTTTCACATAAAACCCAACACAAAAGCATTTATCATAGAGAGAAGTCCTACAAATGTAAAGAATGTGGAAAAACCTTTAATTGGTCCTCAACCCTTACTAATCATAGGAAAATTTATACTGAAGAGAAACCTTACAAATGTGAAGAATATAACAAATCTCCTAAGCAACTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213096-11-37,12-37-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.520 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGGCGCTGTTACCAG
R:
ACAGCCTTTTCTTAACTGTAAATTCT
Band lengths:
148-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains