HsaEX1044929 @ hg38
Exon Skipping
Gene
ENSG00000213096 | ZNF254
Description
zinc finger protein 254 [Source:HGNC Symbol;Acc:HGNC:13047]
Coordinates
chr19:24106548-24129852:+
Coord C1 exon
chr19:24106548-24106643
Coord A exon
chr19:24107971-24108043
Coord C2 exon
chr19:24126254-24129852
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTCATTTAATTTTTGGACAGATT
3' ss Score
5.84
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGTCTGGAACAAGGGAAAGAGCCCTGGAATATGAAGCGACATGAGATGGTGGATGAACCCCCAG
Seq A exon
ATTGAATATCCTTCAGGACTTTGCTGTGCAGGGCAGACCCAAGGGCAGGTTTCTGCACTCAGGCCTGCATATG
Seq C2 exon
GTATGTGTCCTCATTTTGCTCAAGACCTTTGGCCAGAGCAGGGCATGGAAGATTCTTTTCAAAAAGCAATACTGAGAAGATATGGAAAATATGGACATGAGAATTTACAGTTAAGAAAAGGCTGTAAAAGTGTGGATGAGTATAAGGTGAACAAAGAAGGTTATAATGGACTTAACCAGTGTTTCACAACTGCCCAGAGCAAAGTATTTCAATGTGATAAATATTTGAAAGTCTTCTATAAATTTTTAAATTCAAACAGACCTAAGATAAGACATACTGAAAAGAAATCTTTCAAATGTAAAAAACGTGTCAAATTATTTTGCATGCTTTCACATAAAACCCAACACAAAAGCATTTATCATAGAGAGAAGTCCTACAAATGTAAAGAATGTGGAAAAACCTTTAATTGGTCCTCAACCCTTACTAATCATAGGAAAATTTATACTGAAGAGAAACCTTACAAATGTGAAGAATATAACAAATCTCCTAAGCAACTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213096_MULTIEX1-8/8=7-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
ENST00000357002fB30657
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCGACATGAGATGGTGG
R:
ACTCATCCACACTTTTACAGCCT
Band lengths:
174-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains