HsaEX1011606 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46463066-46484828:+
Coord C1 exon
chr21:46463066-46463228
Coord A exon
chr21:46464547-46464624
Coord C2 exon
chr21:46484757-46484828
Length
78 bp
Sequences
Splice sites
3' ss Seq
GAAAAATTTATTTCTCACAGTTC
3' ss Score
5.77
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGTCTGCTTCAGATTAAGATGAAGATGAAGAGTAGAAGTACATGGAACCCCACTCTTCTTAGACCCCCTGCCCCCCAATCATGAACACATACAGAAGAATTCATATGTGTGGTTCCTGAAAACCTATCAGGATGTTCATTGATGGAAGTGAGATCATTAGAG
Seq A exon
TTCCAGAGGATGGAAGTCCAATATTAAGGTACTAGCATCTAGCAAGGACTTTCTTGGCCTGTCATCCCATGGTGGAAG
Seq C2 exon
GTGACATCACTCAAAAAGGATATGAAAAGAAAAGGGCAAAGCTGCTTGCACGTTATATACCGCTTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_MULTIEX3-2/4=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.273 C2=0.167
Domain overlap (PFAM):
C1:
PF064646=DMAP_binding=PD(8.0=25.0)
A:
PF064646=DMAP_binding=PD(14.8=33.3)
C2:
PF064646=DMAP_binding=FE(20.9=100),PF051207=GvpG=FE(46.2=100)
Main Inclusion Isoform:
ENST00000400274fB13800
Main Skipping Isoform:
ENST00000400274fB2079
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCTTAGACCCCCTGCC
R:
ATAACGTGCAAGCAGCTTTGC
Band lengths:
167-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains