HsaEX1011783 @ hg38
Exon Skipping
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122625277-122629993:+
Coord C1 exon
chr10:122625277-122625303
Coord A exon
chr10:122625933-122625965
Coord C2 exon
chr10:122629840-122629993
Length
33 bp
Sequences
Splice sites
3' ss Seq
AGCTTCATTTTTTTTTCTAGATT
3' ss Score
8.7
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
CCACCCAAATAAATTCTACTACGACAG
Seq A exon
ATTGGTGGCATCCAACAACTACAACCACTGCAA
Seq C2 exon
GACCCTCTTCAAATTGTGGTGGCTTCTTATTCTATGCCAGTGGGACATTCTCCAGCCCATCCTACCCTGCATACTACCCCAACAATGCTAAGTGTGTTTGGGAAATAGAAGTGAATTCTGGTTATCGCATAAACCTGGGCTTCAGTAATCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908-'55-50,'55-49,56-50
Average complexity
S
Mappability confidence:
75%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043115=CUB=PU(42.2=88.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCCAAATAAATTCTACTACGACA
R:
TTGTTGGGGTAGTATGCAGGG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains