MmuEX7004288 @ mm10
Exon Skipping
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:131107885-131109635:+
Coord C1 exon
chr7:131107885-131107911
Coord A exon
chr7:131108455-131108481
Coord C2 exon
chr7:131109485-131109635
Length
27 bp
Sequences
Splice sites
3' ss Seq
AGCTTTGTTTCCCTTTCTAGGTT
3' ss Score
12.05
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TCCCTGAGGTGACTTCTCCCAGTCCAG
Seq A exon
GTTGGTGGACTACAAGTCCTTCCTATG
Seq C2 exon
TAAACTATACTTGTGGAGGTTTCCTGACCCAACCCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAATTATCCTAATAATGCCAGATGTCTGTGGAACATCGAGGTCCCAAACAACTACCGTGTGACTGTGGTCTTCAGAGATTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-'49-53,'49-49,51-53=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043115=CUB=PU(43.0=90.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGACTTCTCCCAGTCCAG
R:
CTCGATGTTCCACAGACATCT
Band lengths:
128-155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types