RnoEX0001377 @ rn6
Exon Skipping
Gene
ENSRNOG00000020560 | AABR07005821.1
Description
NA
Coordinates
chr1:201676831-201678512:+
Coord C1 exon
chr1:201676831-201676860
Coord A exon
chr1:201677393-201677413
Coord C2 exon
chr1:201678362-201678512
Length
21 bp
Sequences
Splice sites
3' ss Seq
CGCTTTGTTTCCCTTTCTAGTTT
3' ss Score
11.04
5' ss Seq
ATGATAAGT
5' ss Score
2.83
Exon sequences
Seq C1 exon
TCCCTGATCCGACTCCCTCTCCTGGTCCAG
Seq A exon
TTTGGACAAGTCCTTCTTATG
Seq C2 exon
TAAACTATACTTGTGGAGGTTTCCTGACTGGATTCTCTGGGCAATTTTCTAGCCCATTCTACCCTGGGAGCTATCCTAATAATGCCAGATGTTTGTGGAACATTGAAGTTCCAAACAACTACCGCGTGACTGTGGTCATCAGAGATGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020560-'42-44,'42-43,43-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(0.1=0.0)
A:
NO
C2:
PF0043115=CUB=PU(43.0=90.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATCCGACTCCCTCTCCTG
R:
AGGATAGCTCCCAGGGTAGAA
Band lengths:
104-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]