HsaEX1011905 @ hg38
Exon Skipping
Gene
ENSG00000267432 | DNAH17-AS1
Description
DNAH17 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:48594]
Coordinates
chr17:78484910-78489574:+
Coord C1 exon
chr17:78484910-78485162
Coord A exon
chr17:78485888-78486430
Coord C2 exon
chr17:78489375-78489574
Length
543 bp
Sequences
Splice sites
3' ss Seq
TGTTTGGACATTCCGTGCAGGCG
3' ss Score
5.38
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GCCACCGTCCCATACTTGTCCACCTCGGGCATGTTCATGTCGTCGATGAAGTAGACGAGCTTCTTAGTGCCTGGCGGCCCGTAGTTCCTCCCCGATTTCTTCTCCAGCGGCTTCTCCAGCACCCCTAGAGAGGGCAGAGGGTCAGCTGCCCGCCTGCGCCTCCTGAGCCAGAGCCTGTTAGGTAGGGAGGGGCGCTACCTGCTTCCCCGGAGGACAGAAGGTGGGACCTGGCTGGGATCCAAGTTTACCAAAG
Seq A exon
GCGTGTGGAGGGTACTGCACCGATTCCTGCCTCTAAATCACCAGTCGGTGGCCCTGCTTTGGGGACAGTTACCTGCAGTGGGACATCGGGATCCAGCTCAAAGGAGGGCACTTTATCTGTCCAGGGCAGGAACTTTTTTGTGTCAGGATCAATGTAGTAGTCAAAAATCGTTCCCTGCGAGGGGAACTTGATAGTCTTGAATTCGTTGATCCACCATTTACTGAACTCCACTCGATAATCCACAAGCTGTTGAGACACAGAAGTAAAAATCAGGGCCCAGCTAAGCAGGATGCTGAGAGACCCTGTGTGGGTGGCCGGGCCCCCCAGGTGCATCACCTGGTCCTGGAACATGGCGCCACCGAAGGCCCAGAAGCAGGTGAACACGAAGTACAGCTCGTACAGCTCCCTGGGGGAGTCGGGGGGCACGGTCTTCTCCGTGAGCAGGCACTCCAGCAGGTACAGAATCGTTTGGATCACCGTGATCTCCGGCACTGGCGTGATCTTCTTGAACCCAAAGCGCAACTTGTCCAGGCACGTGGGCAG
Seq C2 exon
CCCTACCCTCCAGCACTCCAAGGCAGGACTCGCCTCACTTCTGGCGCCTCCTGCTGCCTCCTCCATACCTCATTGCCATCTGGCTCTGCCCTCAACACGCCCTGAAGCTGTTCTCCCTGAGTGATGGAGATGCGCCTAGCTCCCAAATGCAATGGGAACTCTTCTGTCCTTGGCTTGACTCTGGGTGCCATCCTACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000267432-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTTCTTCTCCAGCGGCTT
R:
AGTAGGATGGCACCCAGAGTC
Band lengths:
358-901
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains