HsaINT1011409 @ hg38
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein axonemal heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr17:78484868-78485757:-
Coord C1 exon
chr17:78485550-78485757
Coord A exon
chr17:78485034-78485549
Coord C2 exon
chr17:78484868-78485033
Length
516 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGACCCTCTGCCCTCTCTAGGGG
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCCTCTTTGGTCCACACCACGGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCCTGGCCGGTGATGCTGGTGGGGAACGCGGGGACGGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAAAGCCTGAACACGGACAACTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq A exon
GTGAGGCTGGTCCGGCCACGCCCTGCCTACCCGGCTGCCCCCCGCCAGTCCCCGTTCCCTCCTGTCCCCTCTCACTGCAGGCCCAGGCACTCACTAGCCACTTTGCACCTCCTCACTTCCCATGCCCCACCCGCTGGCCTTTCCTTCCTGAGTCGGAGACAGAGGAGGAGCAGCCGGGACCCCTCTTTCTGGTGCTCCCTTGTGGGCATGGTGATGGGGTTTTGATGGCCAGTCGAGGCAGCAGGTCCCCCGGGAGTGTCTCAGCCAATCTAAGGCGACCCAAAGGTGACGGAGAGCAAGGTTCCTGCCACCCTCGCCTCTGATCGCTCTGTTTATTCCTGGGGCTGTACCCGGTGCCCCCTCAAGGGCCACTCCCAGGGCAGGTACCTTTGGTAAACTTGGATCCCAGCCAGGTCCCACCTTCTGTCCTCCGGGGAAGCAGGTAGCGCCCCTCCCTACCTAACAGGCTCTGGCTCAGGAGGCGCAGGCGGGCAGCTGACCCTCTGCCCTCTCTAG
Seq C2 exon
GGGTGCTGGAGAAGCCGCTGGAGAAGAAATCGGGGAGGAACTACGGGCCGCCAGGCACTAAGAAGCTCGTCTACTTCATCGACGACATGAACATGCCCGAGGTGGACAAGTATGGGACGGTGGCCCCGCACACCCTCATCCGGCAGCACATGGACCACCGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775:ENST00000585328:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACACCACGGAAACCATC
R:
CATGTGCTGCCGGATGAGG
Band lengths:
351-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains