MmuINT0050768 @ mm10
Intron Retention
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118072845-118073723:-
Coord C1 exon
chr11:118073516-118073723
Coord A exon
chr11:118073011-118073515
Coord C2 exon
chr11:118072845-118073010
Length
505 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TAACATTCTGTCCTTCTCAGGGG
3' ss Score
9.46
Exon sequences
Seq C1 exon
GCCTCTCTAGTCCACACCACAGAAACCATCCGCATCCGGTACTTCATAGACCTGCTCATGGAGAAGGCATGGCCCGTGATGCTGGTGGGCAACGCGGGCACTGGCAAGTCGGTGCTGATGGGTGACAAGCTGGAGAACCTCAGCACCGACGACTACCTGGTGCAGGCCGTGCCTTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq A exon
GTGAGAGGGCCTGGCCCCACCCTCCCACCTGCCCCTCCCACACCACGCCCCCTCCCACACCCCTCTGTGGGCCCAGGGGACTATGGACTACAAGTCTTGTTTCCATGGAGGCTCCCCAGCGGTGTCCTGGGCAGATGCTATAGTTGTGGTCAATGAGGGGCACTGAGGGTCGGAAAGGCAGCCAGGTCACGGATTAGAGGTTCAGCCAAGGTTGAGACAGATCTCGGATCCTGCCGCCTCCACCTCTGACTGGTGTTTTAATACAGAGGTTACATTGAGTGGCAGATGGTGGACCGTGGTGGATCCCTGCTGCGCGCGCGCGCGCACACACACACACACACACACACACACACACACGCACGTACCACAAGGGTATTTTTCTAGGCACACCCTGCGATTCTGATCCCTGGCCTTCAATTTCCTTCTCCTCATGGGAGGGAGTCTGTCCCCACCCTATCTAACAGGCACCAGCTCAGAGCAATAGATAACATTCTGTCCTTCTCAG
Seq C2 exon
GGGTGCTGGAGAAGCCTCTGGAAAAGAAGTCAGGGAGGAACTACGGCCCCCCAGGCACTAAGAAGCTGATCTACTTCATCGATGACATGAACATGCCAGAGGTGGACAAGTATGGCACGGTGGCCCCACACACCCTCATCCGCCAGCACATGGACCACAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987:ENSMUST00000132685:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGAAACCATCCGCATCC
R:
CAGTGCCTGTGGTCCATGTG
Band lengths:
358-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types