HsaINT0049552 @ hg19
Intron Retention
Gene
ENSG00000187775 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:2946]
Coordinates
chr17:76480950-76481839:-
Coord C1 exon
chr17:76481632-76481839
Coord A exon
chr17:76481116-76481631
Coord C2 exon
chr17:76480950-76481115
Length
516 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGACCCTCTGCCCTCTCTAGGGG
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCCTCTTTGGTCCACACCACGGAAACCATCCGCATCCGCTACTTCATGGACCTGCTCATGGAGAAGTCCTGGCCGGTGATGCTGGTGGGGAACGCGGGGACGGGCAAGTCGGTGCTGATGGGGGACAAGCTGGAAAGCCTGAACACGGACAACTACCTGGTGCAGGCTGTGCCCTTCAACTTCTACACGACCTCAGCCATGCTGCAGG
Seq A exon
GTGAGGCTGGTCCGGCCACGCCCTGCCTACCCGGCTGCCCCCCGCCAGTCCCCGTTCCCTCCTGTCCCCTCTCACTGCAGGCCCAGGCACTCACTAGCCACTTTGCACCTCCTCACTTCCCATGCCCCACCCGCTGGCCTTTCCTTCCTGAGTCGGAGACAGAGGAGGAGCAGCCGGGACCCCTCTTTCTGGTGCTCCCTTGTGGGCATGGTGATGGGGTTTTGATGGCCAGTCGAGGCAGCAGGTCCCCCGGGAGTGTCTCAGCCAATCTAAGGCGACCCAAAGGTGACGGAGAGCAAGGTTCCTGCCACCCTCGCCTCTGATCGCTCTGTTTATTCCTGGGGCTGTACCCGGTGCCCCCTCAAGGGCCACTCCCAGGGCAGGTACCTTTGGTAAACTTGGATCCCAGCCAGGTCCCACCTTCTGTCCTCCGGGGAAGCAGGTAGCGCCCCTCCCTACCTAACAGGCTCTGGCTCAGGAGGCGCAGGCGGGCAGCTGACCCTCTGCCCTCTCTAG
Seq C2 exon
GGGTGCTGGAGAAGCCGCTGGAGAAGAAATCGGGGAGGAACTACGGGCCGCCAGGCACTAAGAAGCTCGTCTACTTCATCGACGACATGAACATGCCCGAGGTGGACAAGTATGGGACGGTGGCCCCGCACACCCTCATCCGGCAGCACATGGACCACCGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187775-DNAH17:NM_173628:47
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCACACCACGGAAACCATC
R:
CATGTGCTGCCGGATGAGG
Band lengths:
351-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)