GgaINT1011511 @ galGal4
Intron Retention
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10085504-10085953:+
Coord C1 exon
chr18:10085504-10085711
Coord A exon
chr18:10085712-10085787
Coord C2 exon
chr18:10085788-10085953
Length
76 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
ACGCTCTCCGCCCTTTGCAGCCA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GCCTCCATGGTGCACACCACCGAGACCGTCCGCATCCGCTACTTCATGGACCTGCTGATGGAGAAGCAGCGGCCGGTGATGCTGGTGGGGAATGCGGGCACGGGGAAAACTGTGCTGATGTGGGACAAGCTCGAAGCTCTCAACACAGAGGAGTACCTGGTGCAGTCTGTGCCTTTTAACTTCTACACCACCTCTGCCATGCTGCAGG
Seq A exon
GTAAGGGCCGCCCACAGCTGCCTCTTTGGGGGCTCCGTTGTGCTTCCCCATGGCCCACGCTCTCCGCCCTTTGCAG
Seq C2 exon
CCATTCTGGAGAAGCCTCTAGAAAAGAAGTCGGGGAGGAACTATGGCCCACCAGGCACTAAGAGGCTCATTTACTTCATTGATGACTTGAACATGCCCGAGGTGGACAAGTATGGCACTGTGGCTCCGCACACACTCATCCGGCAGCACATGGACCATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106:ENSGALT00000011513:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(25.4=100)
A:
NA
C2:
PF127752=AAA_7=FE(20.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTACCTGGTGCAGTCTG
R:
GTGCCATACTTGTCCACCTCG
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]